Gene omics information

Query gene ID	ZmAffx.1410.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	ZmAffx.1410.1.S1_at	40794996-85	-	-	4e+0	At2g07674	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.4917.1.A1_at	CK347849	-	-	3e-9	At3g11730	ATFP8	S.X.	H.G.	Please select
0.30	29.8	Zm.436.1.S1_at	AF100455.1	liguleless3	-	2e-10	At1g62360	STM (SHOOT MERISTEMLESS)	S.X.	H.G.	Please select
0.08	3.4	Zm.12634.1.A1_at	CF048221	hypothetical protein LOC100194224 /// 60S ribosomal protein L23 /// 60S ribosomal protein L23	-	1e-56	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please select
0.08	3.4	Zm.1067.1.A1_at	BM267163	V-type H+-ATPase	-	3e-70	At1g75630	AVA-P4	S.X.	H.G.	Please select
0.07	2.9	Zm.13087.2.A1_a_at	CF629954	hypothetical protein LOC100276346	-	3e-4	At5g47860	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.8	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.2	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.8	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.5	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.4	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	Zm.6532.2.S1_at	CO518285	DNA binding protein	-	3e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5785.3.A1_at	BG873797	hypothetical protein LOC100191838	-	3e-123	At1g02500	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.582.1.S1_at	AF186234.2	yellow stripe1	-	3e-1	At5g24380	YSL2 (YELLOW STRIPE LIKE 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4056.1.A1_at	CA403994	hypothetical protein LOC100192464	-	3e+0	At4g01080	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.17579.1.S1_at	CF024497	RING zinc finger protein-like	-	2e-6	At1g69330	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.958.1.S1_at	AY109128.1	hypothetical protein LOC100279983	-	6e-8	At5g02150	binding	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.7599.1.A1_at	BM079109	-	-	5e-4	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.6826.2.A1_a_at	CK368983	hypothetical protein LOC100193880	-	1e-1	At3g22320	NRPB5	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.4980.1.A1_at	CF626828	hypothetical protein LOC100276552	-	3e-2	At3g14990	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	4e+0	32	Arabidopsis thaliana	At2g07674	815346	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PVMOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	Gma.5675.3.S1_at	BU082503	-	-	8e-1	At5g61228	CPuORF15 (Conserved peptide upstream open reading frame 15)	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	EBro01_SQ002_M14_at	EBro01_SQ002_M14	-	-	7e-1	At5g19875	unknown protein	C.G.	S.X.	Please select
0.61	1e-78	293	Oryza sativa	OsAffx.32251.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.205883.1.S1_at	pmrna11664	hypothetical protein	-	2e-1	At1g29610	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.47742.4.S1_at	CA660585	-	-	2e-1	At1g06060	RanBPM-related	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1615715_at	CF074514	-	-	3e+0	At3g52260	pseudouridine synthase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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