Gene omics information

Query gene ID	ZmAffx.1400.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1400.1.S1_at	40794996-75	-	-	3e+0	At4g05631	unknown protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.138.1.A1_at	AI667759	-	-	3e+0	At1g66510	AAR2 protein family	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1372.1.S1_at	40794996-160	-	-	7e-1	At2g34355	nodulin-related	S.X.	H.G.	Please select
0.56	74.4	ZmAffx.1351.1.S1_at	40794996-43	-	-	2e+0	At3g21520	unknown protein	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.1370.1.S1_at	11990232-98	-	-	5e+0	At5g42955	unknown protein	S.X.	H.G.	Please select
0.43	52.8	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.9	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.2	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.2	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	Zm.7463.1.A1_at	BM078503	hypothetical protein LOC100276250	-	2e+0	At1g21090	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.6868.1.A1_a_at	AI065511	transposon protein Pong sub-class	-	1e+0	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6296.1.A1_at	CF602635	-	-	5e-1	At2g46870	NGA1 (NGATHA1)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.350.1.S1_at	U62753.1	acidic ribosomal protein P2b	-	4e-1	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.13694.1.A1_at	AY106750.1	-	-	3e+0	At5g05430	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.13694.1.S1_at	BG267109	-	-	3e+0	At5g05430	-	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.13193.1.A1_at	CD991429	-	-	4e-6	At4g14990	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8864.1.A1_at	BM269430	hypothetical protein LOC100278083	-	6e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8864.1.A1_s_at	BM269430	hypothetical protein LOC100278083	-	6e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At4g05631	825936	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.76536.1.S1_at	BE800011	-	-	4e+0	At5g06690	WCRKC1 (WCRKC THIOREDOXIN 1)	C.G.	S.X.	Please select
0.03	6e+0	30	Hordeum vulgare	HVSMEg0011N18r2_at	HVSMEg0011N18r2	-	-	6e-2	At1g13607	-	C.G.	S.X.	Please select
0.03	6e+0	32	Oryza sativa	OsAffx.21764.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.44495.1.A1_s_at	CV230381	-	-	3e+0	At1g57730	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.29984.1.S1_at	CA631226	-	-	8e+0	At5g53144	unknown protein	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1621408_at	BQ798831	hypothetical protein LOC100244724	-	5e+0	Atmg01370	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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