Gene omics information

Query gene ID	ZmAffx.1386.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1386.1.S1_at	40794996-61	-	-	7e-1	At3g21920	pollen coat receptor kinase, putative	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.1449.1.S1_at	40794996-6	-	-	1e+0	At3g32090	transcription factor-related	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.159.1.S1_at	AI668136	-	-	1e+1	At5g48680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.1416.1.S1_at	40794996-91	-	-	3e-1	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1415.1.S1_at	40794996-90	-	-	4e-2	At2g25312	-	S.X.	H.G.	Please select
0.46	58.4	ZmAffx.1534.1.S1_at	40794996-126	-	-	9e+0	At5g52730	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.1	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	32	Zm.6616.1.A1_at	CF003465	-	-	8e-1	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5661.1.A1_at	AY107527.1	-	-	1e+0	At2g33585	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.4514.1.A1_at	CO532138	hypothetical protein LOC100279217	-	1e+0	At2g23310	ATRER1C1	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4427.1.A1_at	AI714799	receptor protein kinase PERK1	-	4e-8	At3g24540	protein kinase family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.345.1.S1_at	AJ250987.1	OCL5 protein	-	4e-10	At1g05230	HDG2 (HOMEODOMAIN GLABROUS 2)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.114.1.A1_at	X89761.1	Hox2b protein	-	6e-1	At3g19510	HAT3.1	C.G.	S.X.	Please select
0.04	2e+1	28	ZmAffx.1342.1.S1_at	40794996-150	-	-	9e-31	Atmg00620	-	C.G.	S.X.	Please select
0.03	2e+1	28	Zm.9386.1.A1_at	BQ539064	hypothetical protein LOC100275351	-	2e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.02	2e+1	28	Zm.8344.1.A1_at	CO526131	ZIM motif family protein	-	5e-4	At1g70700	TIFY7	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-1	34	Arabidopsis thaliana	At3g21920	821747	pollen coat receptor kinase, putative	F:molecular_function unknown;P:biological_process unknown;C:extracellular region;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e+0	34	Glycine max	Gma.13919.2.A1_at	BI971966	-	-	3e+0	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	HV_CEa0015H07r2_s_at	HV_CEa0015H07r2	-	-	5e-2	At3g25140	QUA1 (QUASIMODO 1)	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	Os.6119.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.214647.1.S1_s_at	pmrna28448	-	-	7e+0	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	TaAffx.58437.1.S1_at	CA619658	-	-	2e+0	At1g12320	unknown protein	C.G.	S.X.	Please select
0.06	2e-1	34	Vitis vinifera	1606474_s_at	CF208042	hypothetical protein LOC100258865	-	5e+0	At5g09805	IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage