CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.138.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 ZmAffx.138.1.A1_at AI667759 - - 3e+0 At1g66510 AAR2 protein family S.X. H.G.
0.77 92.1 ZmAffx.1370.1.S1_at 11990232-98 - - 5e+0 At5g42955 unknown protein S.X. H.G.
0.73 89.9 ZmAffx.1372.1.S1_at 40794996-160 - - 7e-1 At2g34355 nodulin-related S.X. H.G.
0.73 89.9 ZmAffx.1376.1.S1_s_at 40794996-51 - - 0 Atmg00080 - S.X. H.G.
0.56 74.4 ZmAffx.159.1.A1_at AI668136 - - 1e+1 At5g48680 sterile alpha motif (SAM) domain-containing protein S.X. H.G.
0.44 55.7 ZmAffx.1422.1.S1_at 40794996-97 - - 3e+0 At3g06180 structural constituent of ribosome S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.0 99.0 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7 98.8 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8 97.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320444 protocol: mRNA - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5 97.8 GSM320446 protocol: mRNA - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5 97.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM206316 Upper pulvinus 60 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.1 97.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4 97.0 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 807 ZmAffx.138.1.S1_at AI667759 - - 3e+0 At1g66510 AAR2 protein family C.G. S.X.
0.02 2e-2 38 Zm.18290.1.S1_at BG319707 hypothetical protein LOC100192073 - 4e+0 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) C.G. S.X.
0.03 3e-1 34 Zm.18515.1.A1_at CF629792 hypothetical protein LOC100191462 - 1e+0 At1g16430 surfeit locus protein 5 family protein / SURF5 family protein C.G. S.X.
0.02 1e+0 32 Zm.19101.1.S1_at CF624534 hypothetical protein LOC100273242 - 5e-8 At4g28640 IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11) C.G. S.X.
0.02 1e+0 32 Zm.10071.1.A1_at BM378922 - - 2e+0 At5g38890 exoribonuclease-related C.G. S.X.
0.01 5e+0 30 Zm.8945.1.S1_at AY103889.1 - - 2e-85 At5g18580 FASS (FASS 1) C.G. S.X.
0.03 5e+0 30 Zm.8766.1.A1_at BM349453 - - 1e+0 At5g58360 ATOFP3 C.G. S.X.
0.03 5e+0 30 Zm.8796.1.A1_at BG841012 - - 2e+0 At2g28910 CXIP4 (CAX INTERACTING PROTEIN 4) C.G. S.X.
0.01 5e+0 30 Zm.79.1.S1_at BM416702 beta 2 tubulin (AA 1-444) - 8e-137 At5g62690 TUB2 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 32 Arabidopsis thaliana At1g66510 842969 AAR2 protein family F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB - - - C.G. S.X.
0.04 3e-1 36 Glycine max GmaAffx.26007.1.S1_at AW756071 - - 3e+0 At2g38050 DET2 (DE-ETIOLATED 2) C.G. S.X.
0.07 4e-1 34 Hordeum vulgare Contig8776_s_at Contig8776 - - 1e+0 Atmg00920 - C.G. S.X.
0.03 4e-1 36 Oryza sativa Os10g0509200 AU070802 - PAP fibrillin family protein 5e+0 At1g69330 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 7e-2 38 Populus trichocarpa PtpAffx.71446.1.A1_at CK095033 - - 7e-2 At3g60070 - C.G. S.X.
0.05 1e+1 30 Triticum aestivum TaAffx.59282.1.S1_x_at CA604647 - - 2e+0 At1g08390 nucleic acid binding C.G. S.X.
0.03 9e-1 32 Vitis vinifera 1608637_at BQ792632 hypothetical protein LOC100246087 - 4e+0 At2g35080 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage