CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.1376.1.S1_s_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 ZmAffx.1376.1.S1_s_at 40794996-51 - - 0 Atmg00080 - S.X. H.G.
0.80 94.0 ZmAffx.138.1.A1_at AI667759 - - 3e+0 At1g66510 AAR2 protein family S.X. H.G.
0.60 77.8 ZmAffx.1372.1.S1_at 40794996-160 - - 7e-1 At2g34355 nodulin-related S.X. H.G.
0.55 71.6 ZmAffx.1422.1.S1_at 40794996-97 - - 3e+0 At3g06180 structural constituent of ribosome S.X. H.G.
0.53 69.1 ZmAffx.159.1.A1_at AI668136 - - 1e+1 At5g48680 sterile alpha motif (SAM) domain-containing protein S.X. H.G.
0.46 58.4 ZmAffx.1414.1.S1_at 40794996-89 - - 0 Atmg00520 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 97.5 GSM202290 Mo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6 97.1 GSM202295 Mo17xB73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.3 96.9 GSM202296 B73xMo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.8 96.6 GSM202292 B73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.8 96.6 GSM202299 Mo17xB73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.7 96.5 GSM202297 Mo17 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.7 96.5 GSM202303 Mo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5 96.3 GSM202307 B73xMo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3 96.1 GSM202302 B73xMo17 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3 96.1 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 0 1013 Zm.16501.1.S1_at AY108566.1 - - 0 Atmg00080 - C.G. S.X.
0.01 1e-1 36 Zm.6113.1.A1_at CF630251 - - 7e-2 At4g22745 MBD1 C.G. S.X.
0.03 2e+0 32 ZmAffx.637.1.A1_at AI676831 - - 2e+1 At4g31355 unknown protein C.G. S.X.
0.03 2e+0 32 ZmAffx.637.1.S1_at AI676831 - - 2e+1 At4g31355 unknown protein C.G. S.X.
0.04 2e+0 32 ZmAffx.588.1.S1_at AI715016 - - 1e+1 At4g33100 - C.G. S.X.
0.04 2e+0 32 ZmAffx.588.1.A1_at AI715016 - - 1e+1 At4g33100 - C.G. S.X.
0.01 2e+0 32 Zm.4572.1.S1_at CA399691 hypothetical protein LOC100277482 - 3e-37 At2g42520 DEAD box RNA helicase, putative C.G. S.X.
0.02 2e+0 32 Zm.17914.1.S1_at CK787215 hypothetical protein LOC100193192 - 6e+0 Atmg00080 - C.G. S.X.
0.03 2e+0 32 Zm.14383.1.A1_at AY109259.1 - - 1e+0 At2g33780 VQ motif-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.92 0 801 Arabidopsis thaliana Atmg00080 - - encodes a mitochondrial ribosomal protein L16, which is a constituent of the large ribosomal subunit - - - C.G. S.X.
0.03 6e+0 32 Glycine max HgAffx.18343.1.S1_at CA940837 - - 9e-1 At4g02980 ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1) C.G. S.X.
0.03 8e+0 30 Hordeum vulgare EBem06_SQ003_C15_x_at EBem06_SQ003_C15 - - 9e-1 At5g60460 sec61beta family protein C.G. S.X.
0.99 0 1051 Oryza sativa Os12g0524700 AK064438.1 - Mitochondrial 60S ribosomal protein L16 1e-173 Atmg00090 - C.G. S.X.
0.37 3e-63 242 Populus trichocarpa Ptp.7926.1.S1_at CA821282 - - 1e-73 Atmg00080 - C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.22081.1.S1_at CA720782 - - 5e-1 Atmg00080 - C.G. S.X.
0.17 1e-37 155 Vitis vinifera 1611697_s_at CB339875 - - 2e-132 Atmg00090 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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