Gene omics information

Query gene ID	ZmAffx.1374.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	ZmAffx.1374.1.S1_at	40794996-162	-	-	0	Atmg00270	-	S.X.	H.G.	Please select
0.86	96.3	ZmAffx.1370.1.S1_at	11990232-98	-	-	5e+0	At5g42955	unknown protein	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1372.1.S1_at	40794996-160	-	-	7e-1	At2g34355	nodulin-related	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.138.1.A1_at	AI667759	-	-	3e+0	At1g66510	AAR2 protein family	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.159.1.A1_at	AI668136	-	-	1e+1	At5g48680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.178.1.A1_at	AI668305	trypsin/factor XIIA inhibitor	-	3e+0	At2g24040	hydrophobic protein, putative / low temperature and salt responsive protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.4	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	32	Zm.7757.1.S1_at	BM079780	mitochondrion protein	-	2e-11	At5g37530	thiF family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.13855.1.A1_at	AF439731.1	glycine cleavage complex T-protein	-	7e-47	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.13855.1.S1_at	AF439731.1	glycine cleavage complex T-protein	-	7e-47	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12087.1.A1_at	BU049902	hypothetical protein LOC100191989	-	1e-1	At3g26400	EIF4B1	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.750.1.A1_at	CD999376	hypothetical protein LOC100191573 /// hypothetical protein LOC100276148	-	4e-2	At3g47920	unknown protein	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.42.1.S1_at	D84508.1	CDPK-related protein kinase	-	9e-17	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.3398.1.A1_at	CF349107	ATGP4	-	5e-1	At3g26980	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.2485.1.A1_at	BG841709	hypothetical protein LOC100194257	-	5e+0	At4g05494	unknown protein	C.G.	S.X.	Please select
0.03	3e+1	28	ZmAffx.64.1.A1_at	AI665122	26S proteasome non-ATPase regulatory subunit 14	-	4e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	928	Arabidopsis thaliana	Atmg00270	-	-	NADH dehydrogenase subunit 6	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.13256.1.S1_at	CB374726	-	-	9e-1	At1g72980	LBD7 (LOB DOMAIN-CONTAINING PROTEIN 7)	C.G.	S.X.	Please select
0.04	3e+0	32	Hordeum vulgare	Contig4029_x_at	Contig4029	-	-	3e+0	At5g22080	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.87	0	991	Oryza sativa	OsAffx.32245.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.84	0	872	Populus trichocarpa	PtpAffx.216455.1.S1_s_at	pmrna31236	hypothetical protein	-	0	Atmg00270	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	2e-141	502	Triticum aestivum	TaAffx.87200.1.S1_at	CA594093	-	-	4e-120	Atmg00270	-	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1620696_at	CD798547	-	-	2e-2	At5g03780	TRFL10 (TRF-LIKE 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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