Gene omics information

Query gene ID	ZmAffx.1370.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1370.1.S1_at	11990232-98	-	-	5e+0	At5g42955	unknown protein	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.1372.1.S1_at	40794996-160	-	-	7e-1	At2g34355	nodulin-related	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.1374.1.S1_at	40794996-162	-	-	0	Atmg00270	-	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.178.1.A1_at	AI668305	trypsin/factor XIIA inhibitor	-	3e+0	At2g24040	hydrophobic protein, putative / low temperature and salt responsive protein, putative	S.X.	H.G.	Please select
0.56	74.4	ZmAffx.159.1.A1_at	AI668136	-	-	1e+1	At5g48680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.4	99.7	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.4	99.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.6	99.7	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.5	99.6	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.8	99.6	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-1	32	Zm.3171.1.A1_at	AY104553.1	RNA binding protein	-	4e-12	At2g43970	La domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	30	Zm.2427.1.S1_at	AY108148.1	hypothetical protein LOC100217316	-	1e-3	At2g43970	La domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	30	Zm.16733.1.A1_at	CF623723	-	-	3e-11	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	C.G.	S.X.	Please select
0.02	9e+0	28	Zm.894.1.S1_at	CA400021	DCN1-like protein 2	-	3e-3	At3g12760	-	C.G.	S.X.	Please select
0.01	9e+0	28	Zm.837.1.A1_at	BG320171	hypothetical protein LOC100272396	-	1e-40	At4g21660	proline-rich spliceosome-associated (PSP) family protein	C.G.	S.X.	Please select
0.03	9e+0	28	Zm.6468.1.A1_at	AI692046	hypothetical protein LOC100277167	-	1e-3	At1g14440	AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31)	C.G.	S.X.	Please select
0.01	9e+0	28	Zm.5349.1.A1_at	CF629901	-	-	1e-25	At2g05710	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	C.G.	S.X.	Please select
0.02	9e+0	28	Zm.4543.1.S1_at	CF628165	hypothetical protein LOC100192734	-	2e-16	At5g22370	QQT1 (QUATRE-QUART 1)	C.G.	S.X.	Please select
0.01	9e+0	28	Zm.2957.1.A1_at	CK371564	-	-	5e-12	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e+0	30	Arabidopsis thaliana	At5g42955	834308	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e+0	30	Glycine max	GmaAffx.87543.1.S1_at	BQ080206	-	-	3e+0	At3g23380	RIC5 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5)	C.G.	S.X.	Please select
0.06	6e-1	32	Hordeum vulgare	HB18P10r_at	HB18P10r	-	-	3e+0	At1g11850	unknown protein	C.G.	S.X.	Please select
0.05	1e+1	30	Oryza sativa	Os11g0507100	9639.m02818	-	-	3e+0	At2g11910	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.47	4e-32	137	Populus trichocarpa	PtpAffx.215607.1.S1_s_at	pmrna29898	-	-	2e-1	At5g04180	ACA3 (ALPHA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e+1	28	Triticum aestivum	TaAffx.56957.1.S1_at	CA639370	-	-	3e+0	At4g00895	ATP synthase delta chain-related	C.G.	S.X.	Please select
0.22	4e-13	71	Vitis vinifera	1622566_at	CD718603	-	-	7e+0	At4g30220	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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