Gene omics information

Query gene ID	ZmAffx.1352.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1352.1.S1_at	40794996-156	-	-	0	Atmg00160	-	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1414.1.S1_at	40794996-89	-	-	0	Atmg00520	-	S.X.	H.G.	Please select
0.56	74.4	ZmAffx.1415.1.S1_at	40794996-90	-	-	4e-2	At2g25312	-	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1424.1.S1_at	40794996-99	-	-	9e+0	At2g40240	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1422.1.S1_at	40794996-97	-	-	3e+0	At3g06180	structural constituent of ribosome	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.2	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	1e-128	458	Zm.5941.1.A1_at	AI665879	-	-	3e-86	Atmg00160	-	C.G.	S.X.	Please select
0.11	6e-29	127	ZmAffx.1346.1.S1_at	40794996-153	-	-	5e-21	Atmg00160	-	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.8449.1.A1_at	CK828099	hypothetical protein LOC100276511	-	8e-1	At3g61070	PEX11E	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7569.1.A1_at	BM347275	-	-	1e+0	At1g69880	ATH8 (thioredoxin H-type 8)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.17938.1.A1_at	BM337099	hypothetical protein LOC100216843	-	1e+0	At3g47980	integral membrane HPP family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.1702.1.A1_at	AI964698	hypothetical protein LOC100193172	-	2e-10	At5g53580	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.03	1e+1	30	ZmAffx.546.1.A1_at	AI712125	-	-	8e-1	At2g21210	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.03	1e+1	30	ZmAffx.546.1.S1_at	AI712125	-	-	8e-1	At2g21210	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.01	1e+1	30	ZmAffx.1358.1.S1_at	40794996-159	-	-	0	Atmg01170	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	0	1029	Arabidopsis thaliana	Atmg00160	-	-	cytochrome c oxidase subunit 2	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.65	4e-119	428	Glycine max	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	C.G.	S.X.	Please select
0.57	0	722	Hordeum vulgare	bah21p16_at	bah21p16	-	-	2e-125	Atmg00160	-	C.G.	S.X.	Please select
0.99	0	1513	Oryza sativa	OsAffx.32280.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	2e-99	363	Populus trichocarpa	Ptp.5359.1.S1_at	BU884560	-	-	6e-121	Atmg00160	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.86	0	1221	Triticum aestivum	TaAffx.113847.1.A1_at	X52867.1	-	-	0	Atmg00160	-	C.G.	S.X.	Please select
0.46	6e-139	492	Vitis vinifera	1613797_at	CD797311	hypothetical LOC100254751 /// hypothetical LOC100256339	-	3e-168	Atmg00160	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage