Gene omics information

Query gene ID	ZmAffx.1333.1.S1_s_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1333.1.S1_s_at	11990232-81	-	-	5e-50	Atcg01120	-	S.X.	H.G.	Please select
0.71	88.2	Zm.15233.1.A1_at	BM350529	-	-	4e+0	At3g11050	ATFER2 (ferritin 2)	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1331.1.S1_s_at	40794996-39	-	-	2e+0	Atcg01300	-	S.X.	H.G.	Please select
0.67	85.8	Zm.6048.2.A1_at	AI745933	-	-	6e-17	At2g24360	serine/threonine/tyrosine kinase, putative	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1308.1.S1_s_at	11990232-76	-	-	2e+0	At5g13780	GCN5-related N-acetyltransferase, putative	S.X.	H.G.	Please select
0.34	37.2	ZmAffx.82.1.S1_at	AI665291	-	-	5e-2	At4g11910	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.5	99.5	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-2	36	Zm.6732.1.S1_s_at	AF440221.1	HMG-like nucleosome/chromatin assembly factor D	-	3e-11	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	C.G.	S.X.	Please select
0.04	7e-1	32	Zm.9263.1.A1_at	BM347538	-	-	2e+0	At1g64405	unknown protein	C.G.	S.X.	Please select
0.04	7e-1	32	Zm.8849.1.A1_at	BM351262	-	-	1e+0	At1g48500	JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4)	C.G.	S.X.	Please select
0.02	7e-1	32	Zm.6274.1.A1_at	AI691216	-	-	9e-16	At5g27840	TOPP8	C.G.	S.X.	Please select
0.03	7e-1	32	Zm.13552.1.S1_at	BQ703923	-	-	2e+0	At4g16220	hydrolase, acting on ester bonds	C.G.	S.X.	Please select
0.01	7e-1	32	Zm.13185.1.A1_at	AY104045.1	-	-	1e-22	At3g13060	-	C.G.	S.X.	Please select
0.04	3e+0	30	ZmAffx.1497.1.S1_at	40794996-114	-	-	0	Atmg00110	-	C.G.	S.X.	Please select
0.02	3e+0	30	Zm.9624.1.A1_at	CF632598	hypothetical protein LOC100275520	-	2e-6	At4g25690	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	30	Zm.6688.1.A1_at	BQ538665	hypothetical protein LOC100275476	-	3e+0	At1g68862	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.76	5e-50	196	Arabidopsis thaliana	Atcg01120	-	-	encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-1	36	Glycine max	GmaAffx.66482.1.A1_at	AW348663	-	-	1e-8	At5g44170	-	C.G.	S.X.	Please select
0.05	8e-1	32	Hordeum vulgare	HVSMEm0009E18r2_s_at	HVSMEm0009E18r2	-	-	7e-1	At3g59670	unknown protein	C.G.	S.X.	Please select
0.88	4e-114	410	Oryza sativa	OsAffx.32220.1.A1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	1e-29	129	Populus trichocarpa	PtpAffx.140059.1.A1_at	CV274261	-	-	1e-60	Atcg01120	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	4e-100	363	Triticum aestivum	TaAffx.128617.17.S1_s_at	CA672049	-	-	6e-42	Atcg01120	-	C.G.	S.X.	Please select
0.07	8e-34	141	Vitis vinifera	1622468_at	CF512400	-	-	4e-51	Atcg01120	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage