Gene omics information

Query gene ID	ZmAffx.130.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	96.3	ZmAffx.130.1.A1_at	AI666022	-	-	3e+0	At5g14750	ATMYB66 (MYB DOMAIN PROTEIN 66)	S.X.	H.G.	Please select
0.61	79.5	Zm.4604.1.A1_at	CD959559	-	-	5e+0	At5g37220	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.549.1.S1_at	AI712143	-	-	3e+0	At1g22067	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.15903.1.S1_at	L77912.1	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.44	55.7	Zm.8535.1.A1_at	AY104401.1	senescence-associated protein	-	6e-1	At4g25330	unknown protein	S.X.	H.G.	Please select
0.43	52.8	ZmAffx.222.1.A1_at	AI670230	-	-	1e+1	At5g38650	proteasome maturation factor UMP1 family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.15276.1.A1_at	BM379849	-	-	3e-3	At1g12665	-	S.X.	H.G.	Please select
0.39	45.6	ZmAffx.1042.1.S1_at	AI881783	-	-	3e+0	At2g34700	pollen Ole e 1 allergen and extensin family protein	S.X.	H.G.	Please select
0.38	44.2	ZmAffx.455.1.A1_at	AI677194	hypothetical protein LOC100194007	-	3e+0	At1g44085	glycine-rich protein	S.X.	H.G.	Please select
0.36	41.3	Zm.8565.1.S1_at	CO528893	hypothetical protein LOC100279882	-	8e-7	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.4	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.9	89.6	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.9	89.6	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-17	85	Zm.2918.1.A1_at	BM338680	threonine endopeptidase	-	2e+0	At4g01150	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	32	Zm.4270.2.A1_a_at	CF628998	Bowman-Birk serine protease inhibitor-like	-	2e-2	At4g26020	-	C.G.	S.X.	Please select
0.02	1e+0	30	Zm.2249.1.S1_at	AY108383.1	transcription factor Dp-1	-	1e-20	At5g03415	DPB	C.G.	S.X.	Please select
0.02	6e+0	28	Zm.264.2.A1_x_at	CF012670	acetyl-coenzyme A carboxylase	-	8e+0	At5g02890	transferase family protein	C.G.	S.X.	Please select
0.03	6e+0	28	Zm.17361.1.S1_at	CK370908	-	-	5e-19	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	C.G.	S.X.	Please select
0.03	6e+0	28	Zm.1480.1.A1_at	CA403094	-	-	1e+0	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	C.G.	S.X.	Please select
0.01	6e+0	28	Zm.1483.1.S1_at	BE050487	-	-	1e+0	At5g13470	unknown protein	C.G.	S.X.	Please select
0.05	2e+1	26	ZmAffx.212.1.A1_at	AI670220	-	-	3e+0	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	C.G.	S.X.	Please select
0.05	2e+1	26	ZmAffx.212.1.S1_at	AI670220	-	-	3e+0	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	30	Arabidopsis thaliana	At5g14750	831327	ATMYB66 (MYB DOMAIN PROTEIN 66)	Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	1e+0	32	Glycine max	GmaAffx.26767.2.S1_at	BE352658	MYB transcription factor MYB71	-	4e-45	At5g57620	MYB36 (myb domain protein 36)	C.G.	S.X.	Please select
0.12	6e+0	28	Hordeum vulgare	rbags24a14_x_at	rbags24a14	-	-	3e+0	At5g56075	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	C.G.	S.X.	Please select
0.06	2e+0	32	Oryza sativa	OsAffx.15957.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	5e+0	30	Populus trichocarpa	PtpAffx.223577.1.S1_at	pmrna41635	hypothetical protein	-	6e-1	At1g10840	TIF3H1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	30	Triticum aestivum	Ta.6936.3.S1_at	BE445451	-	-	1e-9	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	C.G.	S.X.	Please select
0.06	4e+0	28	Vitis vinifera	1609969_at	BQ795688	hypothetical protein LOC100241124	-	3e+0	At1g36675	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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