CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.13.1.S1_s_at

Gene name cellulose synthase 11

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 81.1 ZmAffx.13.1.S1_s_at AY372245.1 cellulose synthase 11 - 2e-61 At4g18780 IRX1 (IRREGULAR XYLEM 1) S.X. H.G.
0.67 85.8 Zm.5028.1.S1_at AY103976.1 splicing factor, arginine/serine-rich 12 - 1e+0 At4g23770 unknown protein S.X. H.G.
0.55 71.6 ZmAffx.525.1.S1_at AI711680 - - 8e-1 At5g23170 protein kinase family protein S.X. H.G.
0.43 52.8 Zm.12070.1.A1_at BM418472 ribonuclease P - 2e-1 At3g02090 mitochondrial processing peptidase beta subunit, putative S.X. H.G.
0.35 38.9 ZmAffx.781.1.A1_at AI746268 - - 1e+1 At4g37450 AGP18 (ARABINOGALACTAN PROTEIN 18) S.X. H.G.
0.21 15.5 Zm.11787.1.A1_a_at BM380772 - - 6e+0 At5g17523 - S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.6 99.3 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
17.5 99.1 GSM206301 Upper pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
16.6 99.1 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.2 98.5 GSM206331 Lower pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.0 98.2 GSM206334 Lower pulvinus 60 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.9 97.9 GSM206319 Lower pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.5 97.8 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.4 97.8 GSM206326 Upper pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.3 97.8 GSM206328 Upper pulvinus 60 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.3 97.4 GSM206327 Upper pulvinus 30 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-63 244 Zm.523.1.S1_at AF200533.1 cellulose synthase-9 - 3e-67 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.36 4e-61 236 Zm.520.1.S1_x_at AF200528.1 cellulose synthase-4 - 2e-74 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.36 4e-61 236 Zm.520.1.S1_at AF200528.1 cellulose synthase-4 - 2e-74 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.23 3e-43 176 Zm.7166.1.A1_at AF200532.1 cellulose synthase8 - 3e-36 At4g39350 CESA2 (CELLULOSE SYNTHASE A2) C.G. S.X.
0.20 2e-41 171 Zm.15912.1.S1_at AF200525.1 cellulose synthase-1 - 2e-99 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.22 3e-40 167 Zm.11759.1.S1_at AY372244.1 cellulose synthase10 - 3e-8 At5g17420 IRX3 (IRREGULAR XYLEM 3) C.G. S.X.
0.22 7e-38 159 Zm.518.1.A1_at AF200526.1 cellulose synthase-2 - 9e-120 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.25 7e-35 149 Zm.2396.1.A1_at AF200529.1 cellulose synthase5 - 3e-104 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.22 3e-28 127 Zm.522.1.S1_at AF200531.1 cellulose synthase7 - 1e-38 At2g21770 CESA9 (CELLULOSE SYNTHASE A9) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 2e-61 238 Arabidopsis thaliana At4g18780 827612 IRX1 (IRREGULAR XYLEM 1) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. - - - C.G. S.X.
0.21 3e-55 218 Glycine max Gma.9086.2.S1_at BE555169 - - 5e-34 At4g18780 IRX1 (IRREGULAR XYLEM 1) C.G. S.X.
0.32 1e-42 174 Hordeum vulgare Contig4451_s_at Contig4451 - - 4e-68 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.77 0 1917 Oryza sativa Os01g0750300 AK100475.1 - Cellulose synthase CesA-2 (Fragment) 7e-40 At4g18780 IRX1 (IRREGULAR XYLEM 1) C.G. S.X.
0.40 1e-109 398 Populus trichocarpa Ptp.2713.1.S1_at AY573573.2 cellulose synthase - 5e-96 At4g18780 IRX1 (IRREGULAR XYLEM 1) C.G. S.X.
0.50 0 870 Triticum aestivum Ta.4321.1.A1_at CK165915 - - 6e-30 At4g18780 IRX1 (IRREGULAR XYLEM 1) C.G. S.X.
0.14 6e-13 75 Vitis vinifera 1615577_at CB340193 hypothetical protein LOC100256811 - 4e-92 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage