Gene omics information

Query gene ID	ZmAffx.1299.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1299.1.S1_at	40794996-27	-	-	0	Atmg00580	-	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.774.1.A1_at	AI746198	hypothetical protein LOC100279501	-	2e+0	At2g41000	heat shock protein binding	S.X.	H.G.	Please select
0.44	55.7	Zm.8664.1.A1_at	BM338299	hypothetical protein LOC100274639	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select
0.32	33.4	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	S.X.	H.G.	Please select
0.27	24.6	Zm.2614.2.A1_at	CD436098	-	-	4e-1	At4g31780	MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1)	S.X.	H.G.	Please select
0.25	21.3	Zm.9508.1.A1_at	BM351117	-	-	9e-3	At5g28040	transcription regulator	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.8	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.1	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.5	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	9e-1	34	Zm.17509.1.S1_s_at	CK394687	low temperature viability protein	-	2e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.17509.1.S1_at	CK394687	low temperature viability protein	-	2e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.12160.1.S1_at	CO532241	hypothetical protein LOC100277263	-	5e-2	At5g40180	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.9871.1.A1_at	BM347991	-	-	2e+0	At1g72690	unknown protein	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.8331.1.A1_at	BM349811	-	-	9e-3	At1g72430	auxin-responsive protein-related	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.8278.1.A1_at	CF636750	-	-	8e-1	At4g21920	unknown protein	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.7788.1.A1_at	CK347752	anthocyanidin 3-O-glucosyltransferase	-	9e-1	At3g24093	-	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.7429.1.A1_at	CF635433	hypothetical protein LOC100279582	-	2e-1	At4g32285	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.6874.2.S1_a_at	CF637577	hypothetical protein LOC100193230	-	3e-3	At2g45430	DNA-binding protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	1632	Arabidopsis thaliana	Atmg00580	-	-	NADH dehydrogenase subunit 4	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	GmaAffx.85918.2.S1_at	BQ453444	-	-	6e-14	At1g10830	sodium symporter-related	C.G.	S.X.	Please select
0.02	2e+1	30	Hordeum vulgare	HVSMEi0006J10r2_at	HVSMEi0006J10r2	-	-	3e+0	At4g22710	CYP706A2	C.G.	S.X.	Please select
0.81	0	1972	Oryza sativa	OsAffx.32279.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	9e-90	331	Populus trichocarpa	PtpAffx.219292.1.S1_at	pmrna35164	hypothetical protein	-	3e-97	Atmg00580	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	0	1941	Triticum aestivum	TaAffx.20.1.S1_at	X57163.1	-	-	0	Atmg00580	-	C.G.	S.X.	Please select
0.59	0	787	Vitis vinifera	1607292_s_at	BQ792973	-	-	0	Atmg00580	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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