Gene omics information

Query gene ID	ZmAffx.126.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	94.6	ZmAffx.126.1.A1_at	AI665940	-	-	3e+0	At5g14910	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.52	67.3	Zm.2611.1.A1_a_at	BM348249	hypothetical protein LOC100278318	-	3e-1	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	S.X.	H.G.	Please select
0.47	59.9	Zm.5048.1.A1_a_at	AF015522.1	-	-	2e-96	At5g58420	40S ribosomal protein S4 (RPS4D)	S.X.	H.G.	Please select
0.45	56.4	Zm.280.1.A1_at	U58208.1	Binding protein homolog1	-	0	At5g42020	BIP2	S.X.	H.G.	Please select
0.44	55.7	Zm.12369.1.S1_at	AY107124.1	-	-	2e+1	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	S.X.	H.G.	Please select
0.43	52.8	ZmAffx.718.1.S1_at	AI739895	-	-	8e-1	At1g14440	AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31)	S.X.	H.G.	Please select
0.41	49.7	Zm.11611.1.A1_at	BM379298	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	S.X.	H.G.	Please select
0.41	49.7	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	S.X.	H.G.	Please select
0.41	49.7	ZmAffx.1017.1.A1_at	AI881523	Hypothetical protein LOC100193713	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.1	98.4	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
10.0	98.4	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
9.9	98.3	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.2	98.2	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.5	98.1	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
8.4	98.1	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.4	98.1	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.6	97.9	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.5	97.8	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.2	97.8	GSM375797	Deep-sowing 10d treatment UCZ, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.126.1.S1_at	AI665940	-	-	3e+0	At5g14910	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.23	1e-13	75	Zm.6018.1.A1_at	CF624646	GRF-interacting factor 3-like	-	3e-24	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.10329.1.S1_at	BQ163458	hypothetical protein LOC100279503	-	1e+0	At5g20500	glutaredoxin, putative	C.G.	S.X.	Please select
0.02	5e+0	30	ZmAffx.1220.1.S1_at	11990232-112	-	-	3e+0	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.7110.1.A1_at	BI233931	-	-	1e+0	At3g49645	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6677.1.A1_at	CO518319	AT-hook protein 1	-	8e-3	At4g12080	DNA-binding family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.5070.1.A1_at	AY108736.1	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.5070.1.S1_at	AY108736.1	Hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4579.1.S1_at	AI737193	SWIB/MDM2 domain containing protein	-	2e-3	At3g19080	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At5g14910	831343	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.12174.1.S1_at	AW755955	-	-	3e-13	At3g16270	-	C.G.	S.X.	Please select
0.07	4e-4	44	Hordeum vulgare	Contig7813_at	Contig7813	-	-	3e-12	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os07g0238800	AK106355.1	-	Hypothetical protein	1e+0	At5g63150	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	7e-2	38	Populus trichocarpa	PtpAffx.222206.1.S1_at	pmrna39467	hypothetical protein	-	1e-3	Atcg00360	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	8e-4	44	Triticum aestivum	Ta.4284.2.S1_a_at	CA639822	-	-	3e-1	At4g31510	unknown protein	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1611753_at	CB346846	-	-	4e+0	At3g10670	ATNAP7	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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