Gene omics information

Query gene ID	ZmAffx.1208.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.0	ZmAffx.1208.1.A1_at	BE186278	-	-	8e-1	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select
0.57	75.1	Zm.13459.1.A1_at	CO532418	hypothetical protein LOC100279797	-	7e-12	At5g58240	bis(5'-adenosyl)-triphosphatase, putative	S.X.	H.G.	Please select
0.53	69.1	Zm.10332.1.A1_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.2605.1.S1_at	AY105350.1	hypothetical protein LOC100192590	-	2e+0	At5g41670	6-phosphogluconate dehydrogenase family protein	S.X.	H.G.	Please select
0.48	61.3	ZmAffx.113.1.A1_at	AI665585	Hypothetical protein LOC100193950	-	3e+0	At5g63990	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	S.X.	H.G.	Please select
0.48	61.3	ZmAffx.833.1.A1_at	AI770565	-	-	3e+0	At4g21980	APG8A (AUTOPHAGY 8A)	S.X.	H.G.	Please select
0.39	45.6	ZmAffx.220.1.A1_at	AI670228	-	-	3e+0	At4g14890	ferredoxin family protein	S.X.	H.G.	Please select
0.35	38.9	ZmAffx.807.1.A1_at	AI770389	Hypothetical protein LOC100194367	-	3e+0	At1g65650	UCH2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.4	96.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	1e-130	464	ZmAffx.1208.1.S1_at	BE186278	-	-	8e-1	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.725.1.A1_at	AY107740.1	hypothetical protein LOC100193467	-	7e-14	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.5535.1.S1_at	AY108314.1	Protein kinase-like	-	1e-52	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.17531.1.S1_at	CF637055	hypothetical protein LOC100277863	-	1e-5	At5g12290	DGS1 (DGD1 SUPPRESSOR 1)	C.G.	S.X.	Please select
0.03	5e+0	30	ZmAffx.1340.1.S1_at	11990232-88	-	-	7e-45	Atcg01080	-	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8711.1.S1_a_at	BM078595	autophagy-related 8d	-	2e-15	At2g05630	autophagy 8d (APG8d)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.345.1.S1_at	AJ250987.1	OCL5 protein	-	4e-10	At1g05230	HDG2 (HOMEODOMAIN GLABROUS 2)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.2591.1.A1_a_at	CD433382	autophagy-related 8b /// autophagy-related 8c /// hypothetical protein AY109516	-	4e-51	At1g62040	ATG8C (autophagy 8c)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.2591.3.A1_x_at	CF003515	autophagy-related 8b	-	3e-48	At1g62040	ATG8C (autophagy 8c)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	34	Arabidopsis thaliana	At1g20580	838647	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.44808.1.A1_at	BE820724	-	-	3e+0	At1g76520	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.04	2e+1	28	Hordeum vulgare	Contig5807_s_at	Contig5807	-	-	2e-1	At1g52330	unknown protein	C.G.	S.X.	Please select
0.05	6e+0	32	Oryza sativa	Os04g0212200	CB661419	-	Response regulator receiver domain containingprotein	2e-1	At4g19490	protein binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.202737.1.S1_at	pmrna5468	hypothetical protein	-	2e-2	At5g55550	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	3e+0	32	Triticum aestivum	Ta.10378.1.S1_at	BJ245196	-	-	7e+0	At1g62305	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1611753_at	CB346846	-	-	4e+0	At3g10670	ATNAP7	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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