Gene omics information

Query gene ID	ZmAffx.1198.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	ZmAffx.1198.1.S1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	S.X.	H.G.	Please select
0.50	65.7	Zm.16024.1.S1_a_at	AF298769.1	40S ribosomal protein S24	-	1e-26	At3g04920	40S ribosomal protein S24 (RPS24A)	S.X.	H.G.	Please select
0.40	48.5	Zm.17915.1.A1_at	CF038577	-	-	7e-103	Atmg00830	-	S.X.	H.G.	Please select
0.25	21.3	Zm.12951.1.S1_at	CD444057	hypothetical protein LOC100274682	-	3e+0	At5g13450	ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative	S.X.	H.G.	Please select
0.21	15.5	Zm.15450.1.A1_at	CK827099	-	-	5e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	S.X.	H.G.	Please select
0.18	11.6	Zm.18338.1.A1_at	BM074037	hypothetical protein LOC100193344	-	4e+0	At2g27410	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
44.7	100.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.3	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.4	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.1198.1.A1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	C.G.	S.X.	Please select
0.11	4e-16	83	Zm.281.1.S1_s_at	U06831.1	hypothetical LOC542299	-	2e+0	At5g55170	SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)	C.G.	S.X.	Please select
0.11	4e-16	83	Zm.281.1.S1_at	U06831.1	hypothetical LOC542299	-	2e+0	At5g55170	SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)	C.G.	S.X.	Please select
0.12	4e-16	83	Zm.16226.1.A1_at	BM348522	Hypothetical LOC542299	-	4e-1	At2g20180	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.710.1.A1_at	AY103930.1	-	-	6e+0	At2g18210	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.4674.1.A1_at	AI737924	-	-	3e+0	At3g48208	-	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.7906.1.A1_at	BM268263	zinc finger homeodomain protein 1	-	6e-3	At3g28917	MIF2 (MINI ZINC FINGER 2)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.5418.1.A1_at	CO524535	hypothetical protein LOC100216929	-	2e-4	At1g63980	D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.12311.1.A1_at	CF637247	-	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-1	36	Arabidopsis thaliana	At1g75040	843842	PR5 (PATHOGENESIS-RELATED GENE 5)	Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-2	40	Glycine max	GmaAffx.23370.1.S1_at	BI973090	-	-	2e-1	At3g04640	glycine-rich protein	C.G.	S.X.	Please select
0.29	8e-27	119	Hordeum vulgare	rbaak13h13_s_at	rbaak13h13	-	-	2e+1	At3g03160	unknown protein	C.G.	S.X.	Please select
0.23	5e-28	125	Oryza sativa	OsAffx.32171.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.8582.3.S1_a_at	CX182191	hypothetical protein	-	3e-11	At4g03510	RMA1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	3e-31	135	Triticum aestivum	Ta.25053.1.S1_at	AF442967.1	thaumatin-like protein	-	5e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	C.G.	S.X.	Please select
0.07	2e-1	34	Vitis vinifera	1606794_at	CB972023	hypothetical protein LOC100259841 /// hypothetical protein LOC100254732 /// hypothetical protein LOC100244461 /// hypothetical protein LOC100249610	-	7e+0	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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