Gene omics information

Query gene ID	ZmAffx.1193.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	ZmAffx.1193.1.S1_at	BE025345	-	-	3e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.2269.1.S1_at	CF631922	-	-	1e-7	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	S.X.	H.G.	Please select
0.44	55.7	Zm.2267.1.S1_a_at	AY105804.1	hypothetical protein LOC100216854	-	7e-7	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	S.X.	H.G.	Please select
0.43	52.8	Zm.18083.2.A1_at	CK985909	-	-	1e-12	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.9670.2.A1_a_at	AY110378.1	-	-	4e-4	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.283.1.S1_at	AI670414	-	-	3e+0	At3g23175	lesion inducing protein-related	S.X.	H.G.	Please select
0.35	38.9	ZmAffx.788.1.A1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.7060.1.A1_at	CO530085	-	-	4e-1	At3g10500	anac053 (Arabidopsis NAC domain containing protein 53)	S.X.	H.G.	Please select
0.29	28.1	Zm.17217.1.A1_at	CF633618	Hypothetical protein LOC100194260	-	6e-1	At2g40250	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.23	18.6	ZmAffx.70.1.A1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.1	99.4	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.1193.1.A1_at	BE025345	-	-	3e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.43	0	783	ZmAffx.1220.1.S1_at	11990232-112	-	-	3e+0	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.05	2e-12	71	ZmAffx.1219.1.S1_s_at	40794996-166	-	-	2e-1	At1g13760	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	38	ZmAffx.1215.1.S1_s_at	6273844	-	-	9e-1	At5g64850	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.4852.1.A1_at	CO527893	hypothetical protein LOC100192969	-	3e-2	At4g39000	AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1077.1.A1_at	AI948123	hypothetical protein LOC100274739	-	9e+0	At5g23290	PDF5 (PREFOLDIN 5)	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1077.1.S1_at	AI948123	-	-	9e+0	At5g23290	PDF5 (PREFOLDIN 5)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.12260.1.S1_at	BG320416	hypothetical protein LOC100191300	-	7e-1	At5g42150	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.10256.1.A1_at	BQ547595	-	-	5e-1	At4g31115	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At3g13140	820502	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:cellular_component unknown;PFMBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	2e-20	99	Glycine max	PsAffx.CL184Contig2_at	PsAffx.CL184Contig2	-	-	9e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	Contig26419_at	Contig26419	-	-	4e+0	At2g02515	unknown protein	C.G.	S.X.	Please select
0.22	1e-50	200	Oryza sativa	OsAffx.27508.126.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	0	678	Populus trichocarpa	PtpAffx.249.339.S1_at	CV273575	-	-	3e+0	At3g23420	F-box family protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	2e-124	444	Triticum aestivum	Ta.6492.3.S1_a_at	BJ220894	Vacuolar proton ATPase subunit E	-	4e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.59	0	692	Vitis vinifera	1618537_at	CA818424	-	-	2e+0	At3g23420	F-box family protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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