Gene omics information

Query gene ID	ZmAffx.1187.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	ZmAffx.1187.1.A1_at	BE012211	-	-	3e+0	At4g29033	-	S.X.	H.G.	Please select
0.77	92.1	Zm.3132.1.A1_at	BE512386	hypothetical protein LOC100273996	-	1e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.160.1.A1_at	AI668152	-	-	8e-1	At4g24380	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.18381.1.A1_s_at	CO523274	Hypothetical protein LOC100216796	-	4e-1	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	S.X.	H.G.	Please select
0.46	58.4	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	S.X.	H.G.	Please select
0.10	4.6	ZmAffx.273.1.A1_at	AI670401	-	-	1e+1	At3g22900	NRPD7	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.3	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.1	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.1187.1.S1_at	BE012211	-	-	3e+0	At4g29033	-	C.G.	S.X.	Please select
0.22	8e-39	159	Zm.9891.1.A1_x_at	BM350582	-	-	1e+0	At5g27290	unknown protein	C.G.	S.X.	Please select
0.22	8e-39	159	Zm.9891.1.A1_at	BM350582	-	-	1e+0	At5g27290	unknown protein	C.G.	S.X.	Please select
0.27	2e-33	141	Zm.9837.1.A1_at	BM341641	-	-	9e-1	At1g71740	unknown protein	C.G.	S.X.	Please select
0.28	8e-30	129	Zm.7119.1.S1_at	BI180129	-	-	3e-1	At1g69600	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	C.G.	S.X.	Please select
0.24	5e-25	113	Zm.16524.2.A1_at	BM073456	-	-	3e-2	At5g40660	ATP12 protein-related	C.G.	S.X.	Please select
0.22	2e-24	111	Zm.15340.1.A1_a_at	CO523062	-	-	3e+0	At3g61630	CRF6 (CYTOKININ RESPONSE FACTOR 6)	C.G.	S.X.	Please select
0.22	2e-24	111	Zm.15340.1.A1_at	CO523062	-	-	3e+0	At3g61630	CRF6 (CYTOKININ RESPONSE FACTOR 6)	C.G.	S.X.	Please select
0.29	3e-20	97	Zm.16524.7.S1_at	BM350954	-	-	4e+0	At2g34520	RPS14 (mitochondrial ribosomal protein S14)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e+0	32	Arabidopsis thaliana	At4g29033	3770552	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	PsAffx.C143000028_at	PsAffx.C143000028	-	-	1e+1	At5g57330	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.02	6e+0	30	Hordeum vulgare	Contig6148_at	Contig6148	-	-	2e-3	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.13179.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.203781.1.S1_at	pmrna7466	hypothetical protein	-	2e-8	At4g21220	bacterial transferase hexapeptide repeat-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	3e-3	42	Triticum aestivum	Ta.17449.1.S1_at	CA620972	-	-	1e+1	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1612037_s_at	CF511447	hypothetical protein LOC100256715	-	5e+0	At5g04830	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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