Gene omics information

Query gene ID	ZmAffx.1172.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	ZmAffx.1172.1.A1_at	AW787638	-	-	5e+0	At1g15165	U-box domain-containing protein	S.X.	H.G.	Please select
0.83	95.6	Zm.11655.1.A1_at	BM379701	Grx_C8 - glutaredoxin subgroup III	-	3e-17	At3g02000	ROXY1	S.X.	H.G.	Please select
0.83	95.6	Zm.9670.2.A1_a_at	AY110378.1	-	-	4e-4	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	S.X.	H.G.	Please select
0.80	94.0	Zm.11764.1.A1_at	AY109047.1	GIR1 /// GIR1	-	1e+0	At5g62210	embryo-specific protein-related	S.X.	H.G.	Please select
0.69	86.5	ZmAffx.32.1.A1_s_at	AI657422	rhodopsin-like receptor	-	3e+0	At1g12020	unknown protein	S.X.	H.G.	Please select
0.68	86.1	ZmAffx.283.1.S1_at	AI670414	-	-	3e+0	At3g23175	lesion inducing protein-related	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.820.1.S1_at	AI770463	hypothetical protein LOC100217195	-	8e-1	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please select
0.67	85.8	Zm.18145.1.S1_at	BU079975	-	-	1e+1	At5g46890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.5741.2.A1_at	BM074874	Hypothetical protein LOC100191775	-	4e+0	At5g46940	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.17694.1.S1_at	CK370322	-	-	5e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.1	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.3	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.6	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.2	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	4e-88	321	ZmAffx.1172.1.S1_at	AW787638	hypothetical protein LOC100273964	-	5e+0	At1g15165	U-box domain-containing protein	C.G.	S.X.	Please select
0.03	5e-1	32	Zm.6024.1.A1_at	AW066865	-	-	2e+0	At5g18500	protein kinase family protein	C.G.	S.X.	Please select
0.07	2e+0	30	ZmAffx.1117.1.A1_at	AW257962	-	-	2e+0	At3g15150	zinc ion binding	C.G.	S.X.	Please select
0.07	2e+0	30	ZmAffx.1117.1.S1_at	AW257962	-	-	2e+0	At3g15150	zinc ion binding	C.G.	S.X.	Please select
0.01	2e+0	30	Zm.5796.1.S1_at	AI649702	-	-	3e-41	At1g62750	SCO1 (SNOWY COTYLEDON 1)	C.G.	S.X.	Please select
0.01	2e+0	30	Zm.5796.1.A1_at	BM332299	-	-	3e-41	At1g62750	SCO1 (SNOWY COTYLEDON 1)	C.G.	S.X.	Please select
0.04	2e+0	30	Zm.19208.1.A1_at	CO525556	-	-	1e+0	At1g04930	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	2e+0	30	Zm.18044.1.A1_at	AF519538.1	RNA polymerase II largest subunit	-	2e-123	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	C.G.	S.X.	Please select
0.01	2e+0	30	Zm.18044.1.S1_at	AF519538.1	RNA polymerase II largest subunit	-	2e-123	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	30	Arabidopsis thaliana	At1g15165	838082	U-box domain-containing protein	F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;POBM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	6e+0	30	Glycine max	GmaAffx.75042.1.A1_at	CD397233	-	-	3e+0	At5g08141	AtbZIP75 (Arabidopsis thaliana basic leucine-zipper 75)	C.G.	S.X.	Please select
0.05	2e+0	30	Hordeum vulgare	HS18N01u_x_at	HS18N01u	-	-	1e-2	At3g23010	AtRLP36 (Receptor Like Protein 36)	C.G.	S.X.	Please select
0.04	2e+0	32	Oryza sativa	Os01g0264400	NM_187993.1	-	Conserved hypothetical protein	2e-4	At3g10040	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-1	36	Populus trichocarpa	PtpAffx.30879.1.A1_at	CV258015	hypothetical protein	-	4e-2	At1g68070	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-2	38	Triticum aestivum	Ta.28750.2.A1_x_at	BG905748	-	-	1e+0	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.04	5e+0	28	Vitis vinifera	1618796_at	CF371837	-	-	2e-1	At1g63060	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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