Gene omics information

Query gene ID	ZmAffx.1162.1.S1_at
Gene name	hypothetical protein LOC100278489
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	95.9	ZmAffx.1162.1.S1_at	AW447878	hypothetical protein LOC100278489	-	2e-1	At4g34920	1-phosphatidylinositol phosphodiesterase-related	S.X.	H.G.	Please select
0.55	71.6		-	-	-	0			S.X.	H.G.	Please select
0.53	69.1	Zm.12162.2.S1_a_at	BM498680	SEC13-related protein /// SEC13-related protein	-	2e-4	At2g30050	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.4359.2.A1_x_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.734.1.A1_at	AI740044	-	-	1e+1	At5g01670	aldose reductase, putative	S.X.	H.G.	Please select
0.46	58.4	Zm.8734.1.A1_at	CA403611	hypothetical protein LOC100275773	-	3e-16	At2g42230	tubulin-specific chaperone C-related	S.X.	H.G.	Please select
0.44	55.7	Zm.14107.2.A1_at	AI770963	-	-	8e-1	At3g56880	VQ motif-containing protein	S.X.	H.G.	Please select
0.43	52.8	Zm.5848.1.S1_at	CO529387	phosphoglycerate mutase gpmB	-	6e-1	At5g62320	ATMYB99 (MYB DOMAIN PROTEIN 99)	S.X.	H.G.	Please select
0.43	52.8	Zm.14784.1.A1_at	BG841481	-	-	3e+0	At3g01175	-	S.X.	H.G.	Please select
0.41	49.7	Zm.7645.1.A1_at	BM379053	-	-	5e+0	At5g46300	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.1	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.1162.1.A1_at	AW447878	-	-	2e-1	At4g34920	1-phosphatidylinositol phosphodiesterase-related	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.9839.1.S1_at	AY105069.1	hypothetical protein LOC100193033	-	3e+0	At2g17300	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.9839.1.A1_at	BM339393	Hypothetical protein LOC100193033	-	3e+0	At2g17300	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6923.1.S1_at	AY104489.1	-	-	8e-1	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.552.1.A1_at	AF244691.1	glutathione S-transferase GST 26	-	7e+0	At5g09470	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.16593.1.A1_at	CF629794	Hypothetical protein LOC100192949	-	5e-20	At5g61170	40S ribosomal protein S19 (RPS19C)	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.16593.9.S1_x_at	AI657431	Hypothetical protein LOC100192949	-	1e-2	At5g15520	40S ribosomal protein S19 (RPS19B)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.16593.1.A1_a_at	CF629794	hypothetical protein LOC100192949	-	5e-20	At5g61170	40S ribosomal protein S19 (RPS19C)	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.16593.15.A1_x_at	AI668523	hypothetical protein LOC100192949	-	1e-2	At5g15520	40S ribosomal protein S19 (RPS19B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At4g34920	829644	1-phosphatidylinositol phosphodiesterase-related	F:phospholipase C activity, phosphoric diester hydrolase activity;P:triglyceride biosynthetic process, intracellular signaling cascade, lipid metabolic process, phospholipid biosynthetic process;C:cellular_component unknown;BMFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	PsAffx.CL1234Contig1_at	PsAffx.CL1234Contig1	-	-	1e+1	At5g59080	unknown protein	C.G.	S.X.	Please select
0.33	6e-40	163	Hordeum vulgare	Contig8358_at	Contig8358	-	-	1e-1	At3g25400	-	C.G.	S.X.	Please select
0.33	7e-43	174	Oryza sativa	Os01g0559200	AK102611.1	-	Hypothetical protein	4e-2	At2g46140	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.31489.2.A1_a_at	CK089606	hypothetical protein	-	1e+0	At1g28007	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	4e-49	194	Triticum aestivum	Ta.6164.1.S1_at	BJ215034	-	-	1e-1	At3g25400	-	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1610392_at	CF415548	-	-	2e-1	At2g24762	AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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