CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.116.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 ZmAffx.116.1.A1_at AI665610 - - 3e+0 At5g47700 60S acidic ribosomal protein P1 (RPP1C) S.X. H.G.
0.67 85.8 Zm.18107.1.S1_a_at AY536125.1 meg5 protein - 3e-1 At5g22190 unknown protein S.X. H.G.
0.55 71.6 Zm.6556.1.A1_at AY109683.1 hypothetical protein LOC100273410 - 7e-19 At2g34160 nucleic acid binding S.X. H.G.
0.40 48.5 Zm.2688.2.A1_a_at CK986048 hypothetical protein LOC100273855 - 5e+0 At3g25120 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein S.X. H.G.
0.24 19.8 Zm.17591.2.S1_at CK347917 - - 2e-52 At1g14670 endomembrane protein 70, putative S.X. H.G.
0.15 8.6 Zm.17775.1.S1_at CF627602 50S ribosomal protein L12-2 - 5e+0 At4g14358 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.1 96.8 GSM162264 Mutant 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.8 96.6 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.5 96.3 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.5 96.3 GSM205431 Mo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.2 96.0 GSM205420 Mo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.4 94.9 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2 94.5 GSM205434 Mo17xB73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.2 94.5 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.1 94.3 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.9 93.8 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 807 ZmAffx.116.1.S1_at AI665610 - - 3e+0 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
0.15 4e-13 73 Zm.2654.1.A1_at AY105379.1 - - 5e-2 At2g17200 ubiquitin family protein C.G. S.X.
0.09 6e-6 50 Zm.2654.2.S1_a_at CF040564 ubiquilin-1 - 5e-12 At2g17200 ubiquitin family protein C.G. S.X.
0.09 6e-6 50 Zm.2654.2.S1_at CF040564 - - 5e-12 At2g17200 ubiquitin family protein C.G. S.X.
0.02 3e-1 34 Zm.6401.2.S1_a_at BG266177 hypothetical protein LOC100193788 - 1e-5 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.03 1e+0 32 Zm.9311.1.A1_a_at BG842505 hypothetical protein LOC100274965 - 5e+0 At2g29180 unknown protein C.G. S.X.
0.02 1e+0 32 Zm.8446.1.A1_at CD436884 hypothetical protein LOC100194006 /// hypothetical protein LOC100276606 - 5e-11 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) C.G. S.X.
0.03 1e+0 32 Zm.4357.4.S1_x_at AJ491309.1 22 kDa type alpha zein 2-2 /// z1C alpha zein protein - 1e+0 At3g03460 unknown protein C.G. S.X.
0.02 1e+0 32 Zm.375.1.S1_at AF057184.1 trypsin inhibitor - 1e-1 At5g02440 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At5g47700 834821 60S acidic ribosomal protein P1 (RPP1C) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOAB - - - C.G. S.X.
0.05 7e-5 48 Glycine max Gma.4335.1.S1_at BU548713 - - 8e-3 At2g17190 ubiquitin family protein C.G. S.X.
0.15 1e-13 75 Hordeum vulgare Contig8629_at Contig8629 - - 3e-6 At2g17190 ubiquitin family protein C.G. S.X.
0.14 2e-46 186 Oryza sativa Os03g0131300 AK100656.1 - Ubiquitin domain containing protein 5e-12 At2g17200 ubiquitin family protein C.G. S.X.
0.13 1e-12 73 Populus trichocarpa PtpAffx.33603.2.A1_at CV263112 hypothetical protein - 6e+0 At5g43960 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein C.G. S.X.
0.71 3e-102 371 Triticum aestivum Ta.15576.1.S1_at CA485581 - - 1e+0 At2g31550 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.14 2e-8 57 Vitis vinifera 1610676_at BQ794329 hypothetical protein LOC100267604 - 1e+0 At4g13360 catalytic C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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