Gene omics information

Query gene ID	ZmAffx.1158.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1158.1.S1_at	AW438209	-	-	3e+0	At5g37475	translation initiation factor-related	S.X.	H.G.	Please select
0.29	28.1	Zm.12539.1.A1_at	AI600548	-	-	1e+0	At5g64460	-	S.X.	H.G.	Please select
0.25	21.3	Zm.3816.1.S1_at	AY106865.1	BURP domain containing protein	-	5e+0	At2g11810	MGDC	S.X.	H.G.	Please select
0.23	18.6	Zm.4966.1.A1_at	CA401140	hypothetical protein LOC100278743	-	5e+0	At5g46860	VAM3	S.X.	H.G.	Please select
0.17	10.6	Zm.1364.1.A1_at	AW927470	structural constituent of ribosome	-	6e-3	At5g27820	ribosomal protein L18 family protein	S.X.	H.G.	Please select
0.13	6.8	Zm.13253.1.S1_at	CF630336	-	-	1e-14	At4g08920	CRY1 (CRYPTOCHROME 1)	S.X.	H.G.	Please select
0.13	6.8	Zm.4652.1.A1_at	CO530334	hypothetical protein LOC100192057	-	3e-10	At2g36010	E2F3 (E2F TRANSCRIPTION FACTOR 3)	S.X.	H.G.	Please select
0.13	6.8	Zm.18383.1.A1_at	AY110186.1	delta(14)-sterol reductase	-	4e-18	At3g52940	FK (FACKEL)	S.X.	H.G.	Please select
0.12	5.9	Zm.16804.1.S1_at	CK370595	50S ribosomal protein L17	-	2e-6	At5g09770	ribosomal protein L17 family protein	S.X.	H.G.	Please select
0.10	4.6	Zm.3132.1.S1_a_at	AY112211.1	-	-	1e-10	At5g16040	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
56.7	100.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
53.8	100.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
53.6	100.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.1158.1.A1_at	AW438209	-	-	3e+0	At5g37475	translation initiation factor-related	C.G.	S.X.	Please select
0.14	7e-58	222	Zm.12201.1.A1_at	BM379502	plastid ADP-glucose pyrophosphorylase large subunit	-	3e-13	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select
0.05	2e-2	38	ZmAffx.1132.1.A1_at	AW330934	-	-	3e+0	At5g18040	unknown protein	C.G.	S.X.	Please select
0.05	2e-2	38	ZmAffx.1161.1.A1_at	AW438287	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-	5e-2	At5g51010	rubredoxin family protein	C.G.	S.X.	Please select
0.05	2e-2	38	ZmAffx.1132.1.S1_at	AW330934	-	-	3e+0	At5g18040	unknown protein	C.G.	S.X.	Please select
0.05	2e-2	38	ZmAffx.1161.1.S1_at	AW438287	-	-	5e-2	At5g51010	rubredoxin family protein	C.G.	S.X.	Please select
0.05	2e-2	38	ZmAffx.1151.1.A1_at	AW424605	anaphase-promoting complex subunit 10	-	3e+0	At3g43431	unknown protein	C.G.	S.X.	Please select
0.05	2e-2	38	ZmAffx.1151.1.S1_at	AW424605	-	-	3e+0	At3g43431	unknown protein	C.G.	S.X.	Please select
0.05	2e-2	38	ZmAffx.1160.1.A1_at	AW438281	-	-	1e+1	At1g24060	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g37475	833725	translation initiation factor-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	HgAffx.3468.1.S1_at	CK349222	-	-	3e+0	At1g29480	unknown protein	C.G.	S.X.	Please select
0.25	1e-10	65	Hordeum vulgare	Contig5268_s_at	Contig5268	-	-	9e-4	At1g27680	APL2 (ADPGLC-PPASE LARGE SUBUNIT)	C.G.	S.X.	Please select
0.21	2e-36	153	Oryza sativa	Os03g0735000	AK105092.1	-	ADP-glucose pyrophosphorylase large subunit (EC2.7.7.27)	4e-10	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.161405.1.S1_s_at	CX179921	hypothetical protein	-	2e-26	At3g04830	binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	4e-12	71	Triticum aestivum	Ta.23665.1.A1_at	X14348.1	ADP-glucose pyrophosophorylase	-	4e-23	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select
0.05	9e-1	32	Vitis vinifera	1611370_at	CB348343	hypothetical protein LOC100252190	-	2e+0	At4g09462	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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