Gene omics information

Query gene ID	ZmAffx.1117.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.2	ZmAffx.1117.1.A1_at	AW257962	-	-	2e+0	At3g15150	zinc ion binding	S.X.	H.G.	Please select
0.76	91.1	Zm.15495.6.S1_at	AI861588	60S ribosomal protein L17	-	2e-25	At1g27400	60S ribosomal protein L17 (RPL17A)	S.X.	H.G.	Please select
0.74	90.3	Zm.15890.1.A1_at	AF326494.1	plasma membrane intrinsic protein2	-	9e-28	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	S.X.	H.G.	Please select
0.72	88.6	Zm.16981.1.A1_at	CF645753	hypothetical protein LOC100194132	-	2e-5	At4g08170	inositol 1,3,4-trisphosphate 5/6-kinase family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.14894.1.S1_at	BM332253	-	-	5e+0	At3g28120	unknown protein	S.X.	H.G.	Please select
0.70	87.0	Zm.10807.2.S1_a_at	CD970321	hypothetical protein LOC100280257	-	4e-22	At3g16060	kinesin motor family protein	S.X.	H.G.	Please select
0.70	87.0	Zm.719.1.A1_at	L40957.1	thioredoxin M1	-	5e-1	At1g11684	unknown protein	S.X.	H.G.	Please select
0.68	86.1	Zm.10811.1.A1_s_at	CK370484	hypothetical protein LOC100192755 /// hypothetical protein LOC100277885 /// glycine-rich protein	-	1e-7	At4g39260	GR-RBP8	S.X.	H.G.	Please select
0.68	86.1	Zm.3942.1.A1_at	CD998416	hypothetical protein LOC100192575	-	2e-7	At1g35190	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.68	86.1	Zm.8973.1.S1_a_at	CF058354	hypothetical protein LOC100191732	-	2e-2	At2g18770	signal recognition particle binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
55.8	100.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.3	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
37.4	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.9	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	1e-157	553	ZmAffx.1117.1.S1_at	AW257962	-	-	2e+0	At3g15150	zinc ion binding	C.G.	S.X.	Please select
0.05	7e-20	95	Zm.9575.1.A1_at	BG268282	-	-	9e-1	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.01	9e-1	32	Zm.17830.1.A1_at	CK368104	AP-2 complex subunit mu	-	2e-116	At5g46630	clathrin adaptor complexes medium subunit family protein	C.G.	S.X.	Please select
0.05	4e+0	30	ZmAffx.917.1.A1_at	AI782944	-	-	1e+1	At5g26810	pectinesterase family protein	C.G.	S.X.	Please select
0.05	4e+0	30	ZmAffx.917.1.S1_at	AI782944	-	-	1e+1	At5g26810	pectinesterase family protein	C.G.	S.X.	Please select
0.07	4e+0	30	ZmAffx.1172.1.A1_at	AW787638	-	-	5e+0	At1g15165	U-box domain-containing protein	C.G.	S.X.	Please select
0.07	4e+0	30	ZmAffx.1172.1.S1_at	AW787638	hypothetical protein LOC100273964	-	5e+0	At1g15165	U-box domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.8743.1.A1_at	BM347268	blue copper protein	-	1e-1	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.01	4e+0	30	Zm.800.1.S1_at	BG319937	phosphoenolpyruvate carboxylase	-	8e-55	At1g53310	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	At3g15150	820746	zinc ion binding	F:zinc ion binding;P:unknown;C:unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	32	Glycine max	Gma.15048.2.S1_at	BG238374	-	-	2e-5	At3g15680	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.03	4e+0	30	Hordeum vulgare	Contig2290_s_at	Contig2290	-	-	2e-18	At2g19740	60S ribosomal protein L31 (RPL31A)	C.G.	S.X.	Please select
0.11	5e-21	101	Oryza sativa	Os09g0565500	AK063286.1	-	Invasin/intimin cell-adhesion domain containingprotein	1e+0	At5g17550	PEX19-2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-1	34	Populus trichocarpa	PtpAffx.125276.1.S1_at	AI161625	hypothetical protein	-	1e-6	At2g30100	ubiquitin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	9e+0	30	Triticum aestivum	Ta.14849.1.S1_at	CA683215	-	-	8e+0	At5g49250	beta-galactosidase	C.G.	S.X.	Please select
0.04	4e-2	36	Vitis vinifera	1614151_a_at	CA816767	-	-	3e-60	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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