Gene omics information

Query gene ID	ZmAffx.1110.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.5	ZmAffx.1110.1.A1_at	AW225256	-	-	8e-1	At5g06250	transcription factor	S.X.	H.G.	Please select
0.58	75.1	Zm.1572.1.A1_at	BQ538744	hypothetical protein LOC100217100	-	4e+0	At5g08330	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.13622.1.A1_at	AY107434.1	hypothetical protein LOC100274236	-	5e-2	At2g26350	PEX10	S.X.	H.G.	Please select
0.48	61.3	Zm.5738.1.S1_at	AI637188	-	-	6e-9	At3g20630	UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14)	S.X.	H.G.	Please select
0.48	61.3	Zm.8287.1.A1_at	AI737226	hypothetical protein LOC100192745	-	5e+0	At5g65740	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.47	59.9	Zm.11806.1.S1_at	BM380898	thylakoid lumenal 16.5 kDa protein	-	6e+0	At5g42146	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.5789.10.A1_x_at	AI737302	hypothetical protein LOC100192516	-	6e-14	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	S.X.	H.G.	Please select
0.46	58.4	Zm.2617.1.A1_at	AI964629	-	-	9e+0	At4g34190	SEP1 (STRESS ENHANCED PROTEIN 1)	S.X.	H.G.	Please select
0.43	52.8	Zm.13593.1.S1_at	AY107755.1	-	-	1e-8	At5g60620	phospholipid/glycerol acyltransferase family protein	S.X.	H.G.	Please select
0.42	51.3	Zm.5265.1.S1_at	CD441734	Hypothetical protein LOC100191432	-	4e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.0	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.1110.1.S1_at	AW225256	-	-	8e-1	At5g06250	transcription factor	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6927.2.A1_a_at	CF038958	hypothetical protein LOC100194137	-	1e-20	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6927.2.S1_at	CF038958	Hypothetical protein LOC100194137	-	1e-20	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6587.1.A1_at	BM378727	acyl CoA synthetase	-	1e-5	At1g64400	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4475.1.S1_a_at	CK144480	hypothetical protein LOC100272240 /// thioredoxin H-type 5 /// 60S acidic ribosomal protein P1 /// umc1811 protein	-	1e-1	At1g54060	ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.3446.1.A1_at	BM341630	hypothetical protein LOC100192916	-	3e-16	At1g34220	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.17582.1.A1_at	BM080007	auxin-independent growth promoter-like protein	-	2e-22	At3g26370	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.9464.1.A1_at	CF972371	hypothetical protein LOC100272725	-	1e-1	At4g14385	-	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.8893.1.A1_at	AY107533.1	-	-	3e-66	At2g38280	FAC1 (EMBRYONIC FACTOR1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	Arabidopsis thaliana	At5g06250	830512	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.89630.1.A1_s_at	CK606252	-	-	2e+0	At1g11270	F-box family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig15610_at	Contig15610	-	-	9e-2	At4g39880	ribosomal protein L23 family protein	C.G.	S.X.	Please select
0.03	2e-3	44	Oryza sativa	Os01g0315200	9629.m02031	-	-	9e+0	At5g63063	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.217123.1.S1_s_at	pmrna32266	hypothetical protein	-	2e-1	At5g49120	senescence-associated protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	Ta.21885.1.S1_at	CA706486	-	-	2e+0	At1g02320	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1617083_at	CB912270	-	-	3e+0	At5g62575	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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