Gene omics information

Query gene ID	ZmAffx.1103.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.42	51.3	ZmAffx.1103.1.A1_at	AW191100	-	-	1e+1	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	S.X.	H.G.	Please select
0.60	77.8	Zm.7054.1.S1_at	BM331766	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	S.X.	H.G.	Please select
0.53	69.1	Zm.12300.1.A1_at	CF626520	ruBisCO large subunit-binding protein subunit alpha	-	1e-37	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	S.X.	H.G.	Please select
0.53	69.1	Zm.12184.1.A1_at	BM380021	-	-	6e-10	At4g11960	PGRL1B (PGR5-Like B)	S.X.	H.G.	Please select
0.50	65.7	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.89.1.A1_at	AI665353	hypothetical protein LOC100277768	-	1e+1	At5g20560	beta-1,3-glucanase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.3	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	765	ZmAffx.1103.1.S1_at	AW191100	-	-	1e+1	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9100.1.A1_at	BM350640	-	-	1e+0	At5g12240	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.669.1.S1_at	AF332173.1	alpha-expansin 5	-	8e-4	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.665.1.S1_at	AF332169.1	alpha expansin1	-	7e-13	At2g37640	EXP3	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5450.1.A1_at	CO521828	hypothetical protein LOC100216592	-	1e-1	At1g08080	ACA7 (ALPHA CARBONIC ANHYDRASE 7)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.18046.1.A1_at	BI993031	-	-	4e-1	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zm.15233.1.A1_at	BM350529	-	-	4e+0	At3g11050	ATFER2 (ferritin 2)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.14516.1.S1_at	CA404692	transcription initiation factor TFIID subunit 10	-	3e-2	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.13354.1.S1_s_at	AW067009	indole-3-acetic acid-amido synthetase GH3.8	-	4e-12	At2g14960	GH3.1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g43700	834390	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	Auxin inducible protein similar to transcription factors.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	7e-2	38	Glycine max	HgAffx.3477.1.A1_at	CK349213	-	-	3e+0	At5g27710	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Hordeum vulgare	Contig11814_at	Contig11814	-	-	2e+0	At5g44300	dormancy/auxin associated family protein	C.G.	S.X.	Please select
0.02	4e-1	36	Oryza sativa	Os01g0611800	9629.m04087	-	-	3e+0	At5g55450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.213875.1.S1_at	pmrna27062	hypothetical protein	-	2e-1	At5g41890	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	Ta.12266.1.A1_at	BQ171977	-	-	1e+1	At5g42500	disease resistance-responsive family protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1619658_at	CF371851	-	-	4e-15	At2g14960	GH3.1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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