Gene omics information

Query gene ID	ZmAffx.1097.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	S.X.	H.G.	Please select
0.77	92.1	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.1546.3.A1_x_at	CK369824	-	-	1e-6	At1g15270	-	S.X.	H.G.	Please select
0.71	88.2	Zm.18903.1.A1_at	CO530915	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please select
0.60	77.8	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
53.3	100.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
45.5	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
44.9	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.6	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	688	ZmAffx.1097.1.A1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.237.1.S1_at	AJ011616.1	SBP-domain protein3	-	2e-8	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.7920.1.S1_at	BQ619130	hypothetical protein LOC100273327	-	7e+0	At4g27470	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.14904.1.A1_at	CO521990	-	-	3e-7	At1g10120	DNA binding / transcription factor	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.19213.1.S1_at	CO518628	hypothetical protein LOC100192615	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.18318.1.S1_at	CF007597	-	-	1e-17	At2g35040	AICARFT/IMPCHase bienzyme family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.18147.1.S1_at	CN845526	hypothetical protein LOC100275370	-	5e+0	At3g17950	unknown protein	C.G.	S.X.	Please select
0.06	5e+0	30	Zm.13886.1.S1_x_at	AF099412.1	R2R3MYB-domain protein	-	6e-2	At5g62470	MYB96 (myb domain protein 96)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.10812.1.A1_at	CD976050	-	-	2e-4	At2g28450	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	30	Arabidopsis thaliana	At5g25770	832646	unknown protein	F:unknown;P:biological_process unknown;C:unknown;BOAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e+0	32	Glycine max	PsAffx.psZS014xC15f_s_at	PsAffx.psZS014xC15f	-	-	1e+1	At3g03000	calmodulin, putative	C.G.	S.X.	Please select
0.06	8e-2	36	Hordeum vulgare	HVSMEf0013L02r2_at	HVSMEf0013L02r2	-	-	1e+1	At5g54067	unknown protein	C.G.	S.X.	Please select
0.05	3e-1	36	Oryza sativa	Os07g0663900	9635.m04717	-	Short-chain dehydrogenase/reductase SDR familyprotein	2e+0	At5g44450	methyltransferase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e+0	32	Populus trichocarpa	PtpAffx.135963.1.A1_at	CK094985	-	-	5e-1	At1g72416	heat shock protein binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-1	36	Triticum aestivum	Ta.1339.1.S1_at	BE425535	-	-	3e+0	At5g62350	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)	C.G.	S.X.	Please select
0.03	5e-2	36	Vitis vinifera	1621270_at	CB971990	hypothetical protein LOC100252531	-	4e-4	At5g11590	TINY2 (TINY2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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