Gene omics information

Query gene ID	ZmAffx.1085.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1085.1.S1_at	AW018111	-	-	3e+0	At1g67035	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.3284.2.A1_a_at	CF631443	-	-	5e+0	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	S.X.	H.G.	Please select
0.57	75.1	Zm.4999.1.S1_at	AI600285	-	-	7e-1	At5g04047	-	S.X.	H.G.	Please select
0.55	71.6	Zm.556.2.A1_a_at	BM380003	glutathione transferase31	-	6e-4	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	S.X.	H.G.	Please select
0.50	65.7	Zm.6951.1.A1_at	AI065801	-	-	3e+0	At1g60710	ATB2	S.X.	H.G.	Please select
0.34	37.2	Zm.1682.2.S1_at	AI834570	ran-binding protein 1	-	3e-12	At1g07140	SIRANBP	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
49.9	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
49.7	100.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.9	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	700	ZmAffx.1085.1.A1_at	AW018111	zinc finger, C3HC4 type family protein	-	3e+0	At1g67035	unknown protein	C.G.	S.X.	Please select
0.01	7e-2	36	Zm.4652.1.A1_at	CO530334	hypothetical protein LOC100192057	-	3e-10	At2g36010	E2F3 (E2F TRANSCRIPTION FACTOR 3)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.4572.1.S1_at	CA399691	hypothetical protein LOC100277482	-	3e-37	At2g42520	DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.8589.1.A1_at	BM074786	-	-	2e+1	At5g42655	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.7992.1.S1_at	BM340530	dcp1-like decapping family protein	-	3e-6	At1g08370	DCP1 (decapping 1)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.3952.1.S1_at	AW155692	-	-	1e-4	At2g19950	GC1 (Golgin Candidate 1)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9278.1.A1_at	BM348240	-	-	1e+0	At3g22530	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.7069.1.S1_at	AF036891.2	plastid starch synthase I precursor	-	3e-4	At5g24300	SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.3236.1.S1_at	BG837635	hypothetical protein LOC100279928	-	3e-1	At5g03350	legume lectin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At1g67035	843023	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.88342.3.S1_at	CA784845	-	-	5e-2	At2g02400	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.06	5e+0	30	Hordeum vulgare	HD10C22r_x_at	HD10C22r	-	-	2e-3	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	C.G.	S.X.	Please select
0.03	5e+0	32	Oryza sativa	Os06g0197200	AK059180.1	-	20 kDa chaperonin, chloroplast precursor (ProteinCpn21) (Chloroplast protein Cpn10) (Chloroplastchaperonin 10) (Ch-CPN10) (Chaperonin 20)	2e-2	At4g26730	methyltransferase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-1	36	Populus trichocarpa	PtpAffx.138291.1.S1_s_at	AY179506.1	transcription factor E2F	-	3e-10	At2g36010	E2F3 (E2F TRANSCRIPTION FACTOR 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+1	30	Triticum aestivum	Ta.9534.2.A1_a_at	BJ307813	-	-	5e-6	At3g15380	choline transporter-related	C.G.	S.X.	Please select
0.04	8e-1	32	Vitis vinifera	1607416_at	CB340443	-	-	7e-1	At1g24580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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