Gene omics information

Query gene ID	ZmAffx.1078.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	ZmAffx.1078.1.S1_at	AI948227	-	-	3e-2	At3g22845	emp24/gp25L/p24 protein-related	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.172.1.A1_at	AI668238	-	-	3e+0	Atmg00240	-	S.X.	H.G.	Please select
0.62	79.8	Zm.4185.1.A1_at	AI622761	hypothetical protein LOC100274506	-	9e-8	At1g24360	3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase	S.X.	H.G.	Please select
0.61	79.5	Zm.16475.3.A1_at	BQ704114	-	-	2e-7	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	S.X.	H.G.	Please select
0.57	75.1	Zm.12480.1.A1_at	AI901944	hypothetical protein LOC100194202	-	4e-1	At4g15393	CYP702A5	S.X.	H.G.	Please select
0.57	75.1	Zm.15671.1.A1_at	AI622439	-	-	4e-1	At5g20630	GER3 (GERMIN 3)	S.X.	H.G.	Please select
0.55	71.6	Zm.13916.1.S1_at	AF037027.1	peroxidase R15	-	6e-7	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please select
0.48	61.3	ZmAffx.1360.1.S1_at	40794996-48	-	-	1e+0	At5g44650	unknown protein	S.X.	H.G.	Please select
0.45	56.4	ZmAffx.147.1.S1_at	AI667831	Hypothetical protein LOC100192026	-	3e+0	At2g20260	PSAE-2 (photosystem I subunit E-2)	S.X.	H.G.	Please select
0.41	49.7	Zm.8795.1.A1_a_at	BM337357	-	-	5e+0	At5g66550	Maf family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.9	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.6	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-2	36	Zm.5553.1.A1_at	AI622659	-	-	7e-7	At1g60200	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	8e-1	32	Zm.2784.1.A1_at	CF629950	hypothetical protein LOC100276915	-	5e-8	At5g17420	IRX3 (IRREGULAR XYLEM 3)	C.G.	S.X.	Please select
0.02	1e+1	28	Zm.8850.1.A1_at	CO533203	hypothetical protein LOC100272618	-	4e-2	At3g17940	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.01	1e+1	28	Zm.697.1.A1_a_at	AB102957.1	histidine kinase 3	-	1e-17	At5g35750	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2)	C.G.	S.X.	Please select
0.03	1e+1	28	Zm.6277.1.A1_at	BM381033	hypothetical protein LOC100192758	-	3e-29	At3g22750	protein kinase, putative	C.G.	S.X.	Please select
0.02	1e+1	28	Zm.3570.1.A1_at	BG840178	-	-	6e-1	At1g54260	histone H1/H5 family protein	C.G.	S.X.	Please select
0.04	1e+1	28	Zm.17843.1.A1_at	BM380806	hypothetical protein LOC100216964	-	2e-2	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	C.G.	S.X.	Please select
0.03	1e+1	28	Zm.15405.1.A1_at	CF628994	50S ribosomal protein L18 /// 50S ribosomal protein L18	-	2e-6	At5g27820	ribosomal protein L18 family protein	C.G.	S.X.	Please select
0.02	1e+1	28	Zm.13646.1.A1_at	AY107248.1	-	-	3e-2	At3g10290	phosphate translocator-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-2	38	Arabidopsis thaliana	At3g22845	821856	emp24/gp25L/p24 protein-related	F:unknown;P:transport;C:vacuole;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+0	32	Glycine max	GmaAffx.81267.1.S1_at	BU965377	-	-	2e-1	At5g50870	UBC27 (ubiquitin-conjugating enzyme 27)	C.G.	S.X.	Please select
0.07	1e+1	28	Hordeum vulgare	EBem05_SQ003_F24_s_at	EBem05_SQ003_F24	-	-	4e+0	At3g21710	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	32	Oryza sativa	Os11g0638400	9639.m03858	-	-	5e-3	At3g15040	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+1	30	Populus trichocarpa	PtpAffx.56690.1.A1_at	CV255946	hypothetical protein	-	4e+0	At2g03050	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+1	28	Triticum aestivum	TaAffx.59218.1.S1_at	CA605964	-	-	1e+1	At5g15853	unknown protein	C.G.	S.X.	Please select
0.04	9e+0	28	Vitis vinifera	1614926_at	CF369045	-	-	7e-8	At2g45630	oxidoreductase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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