Gene omics information

Query gene ID	ZmAffx.1074.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	ZmAffx.1074.1.S1_at	AI947680	-	-	1e+1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	S.X.	H.G.	Please select
0.91	99.0	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	S.X.	H.G.	Please select
0.73	89.9	Zm.4099.2.A1_s_at	AI770849	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.18903.1.A1_at	CO530915	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please select
0.53	69.1	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	S.X.	H.G.	Please select
0.48	61.3	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.8	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.2	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	3e-109	393	ZmAffx.1074.1.A1_at	AI947680	-	-	1e+1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.05	3e-4	44	Zm.16749.1.A1_at	CF648074	inhibitor of apoptosis-like protein	-	6e+0	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.7675.1.A1_at	BM379874	hypothetical protein LOC100216850	-	2e-1	At5g01200	myb family transcription factor	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.18993.1.S1_at	CO528827	-	-	3e-3	At2g10950	BSD domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.18993.1.A1_at	CO528826	hypothetical protein LOC100274581	-	3e-3	At2g10950	BSD domain-containing protein	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.17499.1.A1_at	CK145371	hypothetical protein LOC100279269	-	3e-1	At2g03230	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.9954.1.A1_a_at	BM349938	enzyme of the cupin superfamily	-	5e-1	At4g28500	ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.8787.1.A1_at	CB350639	-	-	3e-1	At3g01170	structural constituent of ribosome	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.7163.1.A1_at	CF637817	-	-	7e-1	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	30	Arabidopsis thaliana	At2g42210	818821	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-1	34	Glycine max	PsAffx.C291000002_at	PsAffx.C291000002	-	-	4e+0	At5g26840	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Hordeum vulgare	Contig21563_at	Contig21563	-	-	6e+0	At5g28390	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.16	2e-33	143	Oryza sativa	Os03g0668500	AK064871.1	-	Hypothetical protein	5e+0	At5g25160	ZFP3 (ZINC FINGER PROTEIN 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-1	36	Populus trichocarpa	PtpAffx.220601.1.S1_at	pmrna37006	hypothetical protein	-	2e+0	At3g17845	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	2e-19	95	Triticum aestivum	Ta.11568.1.A1_at	BQ170373	-	-	3e+0	Atmg01330	-	C.G.	S.X.	Please select
0.03	3e+0	30	Vitis vinifera	1615338_at	BQ798891	-	-	3e-1	At3g18960	transcriptional factor B3 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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