Gene omics information

Query gene ID	ZmAffx.1053.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	ZmAffx.1053.1.A1_at	AI881846	-	-	3e+0	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	S.X.	H.G.	Please select
0.59	76.1	Zm.5132.1.A1_at	AY105555.1	calcium lipid binding protein-like	-	7e-1	At1g15320	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.4359.2.A1_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.144.2.A1_at	BE123186	Metallothionein2	-	1e+1	At3g58370	K-Cl Co-transporter type 1 protein-related / KCC1 protein-related	S.X.	H.G.	Please select
0.31	31.6	Zm.19103.1.S1_at	CF625279	hypothetical protein LOC100193224	-	3e+0	At4g09490	RNase H domain-containing protein	S.X.	H.G.	Please select
0.09	4.0	Zm.16394.1.S1_at	CF272871	-	-	1e-1	At2g03470	myb family transcription factor / ELM2 domain-containing protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
67.8	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
46.2	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.2	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.2	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.2	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.1053.1.S1_at	AI881846	-	-	5e-2	At4g37390	BRU6	C.G.	S.X.	Please select
0.33	1e-167	587	Zm.13354.1.S1_s_at	AW067009	indole-3-acetic acid-amido synthetase GH3.8	-	4e-12	At2g14960	GH3.1	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.777.1.S1_a_at	CD442368	hypothetical protein LOC100272376	-	4e-8	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.19066.1.S1_at	CD975063	-	-	1e-37	At2g02000	GAD3 (glutamate decarboxylase 3)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.13727.1.A1_at	CK986131	NADPH quinone oxidoreductase 1	-	2e-6	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.8793.1.A1_at	CD436545	-	-	3e+0	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.7998.1.A1_at	AY106482.1	hypothetical protein LOC100273454	-	3e+0	At4g11680	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.7363.1.A1_at	BM079340	SAUR55 - auxin-responsive SAUR family member	-	6e+0	At4g24950	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.5805.2.A1_a_at	AI649736	filamentation temperature-sensitive H 2A /// filamentation temperature-sensitive H 2B	-	2e-56	At1g06430	FTSH8	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At1g16240	838193	SYP51 (SYNTAXIN OF PLANTS 51)	Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	8e-8	57	Glycine max	GmaAffx.3864.1.S1_at	BU547804	-	-	2e-9	At4g37390	BRU6	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	Contig14245_at	Contig14245	-	-	4e-1	At5g25190	ethylene-responsive element-binding protein, putative	C.G.	S.X.	Please select
0.27	1e-133	476	Oryza sativa	Os07g0592600	AK101193.1	-	GH3 homolog (Fragment)	3e-16	At2g14960	GH3.1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.220676.1.S1_at	pmrna37086	hypothetical protein	-	2e+1	At4g33100	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	1e-89	329	Triticum aestivum	TaAffx.87187.1.S1_at	CA594339	-	-	6e-6	At2g14960	GH3.1	C.G.	S.X.	Please select
0.04	1e+1	28	Vitis vinifera	1622458_at	CB001788	-	-	1e+0	At1g51570	C2 domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage