Gene omics information

Query gene ID	ZmAffx.1044.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.9	ZmAffx.1044.1.A1_at	AI881789	-	-	3e-1	At5g66800	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.10438.1.S1_at	CA826544	-	-	1e+1	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	S.X.	H.G.	Please select
0.55	71.6	Zm.9948.1.A1_at	CB350788	3-N-debenzoyl-2-deoxytaxol N-benzoyltransferase	-	2e+0	At1g54575	unknown protein	S.X.	H.G.	Please select
0.52	67.3	ZmAffx.971.1.S1_at	AI833875	-	-	3e+0	At3g05170	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select
0.51	66.4	Zm.15967.1.S1_at	CA404149	-	-	2e-4	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	S.X.	H.G.	Please select
0.49	61.9	ZmAffx.960.1.S1_at	AI833639	-	-	3e+0	At2g19640	ASHR2 (ASH1-RELATED PROTEIN 2)	S.X.	H.G.	Please select
0.48	61.3	Zm.18245.1.S1_at	AI665288	-	-	2e+0	At5g18130	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.13662.1.A1_at	AY107114.1	-	-	4e+0	At2g40740	WRKY55	S.X.	H.G.	Please select
0.46	58.4	Zm.4716.1.A1_at	AI738149	hypothetical protein LOC100193057	-	1e-1	At4g37750	ANT (AINTEGUMENTA)	S.X.	H.G.	Please select
0.46	58.4	Zm.11590.1.A1_at	BM379183	leucoanthocyanidin dioxygenase	-	5e-3	At5g20400	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
79.9	100.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
37.9	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	5e-84	307	ZmAffx.1044.1.S1_at	AI881789	-	-	3e-1	At5g66800	unknown protein	C.G.	S.X.	Please select
0.05	1e-1	34	Zm.819.1.A1_at	BG266141	cp protein	-	3e-1	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	C.G.	S.X.	Please select
0.05	1e-1	34	Zm.819.1.S1_at	H35893	-	-	3e-1	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	C.G.	S.X.	Please select
0.03	1e-1	34	Zm.6671.3.S1_at	CO519752	hypothetical protein LOC100273935	-	2e-3	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	C.G.	S.X.	Please select
0.04	1e-1	34	Zm.12150.1.S1_at	AY106576.1	60S ribosomal protein L30	-	7e-15	At1g36240	60S ribosomal protein L30 (RPL30A)	C.G.	S.X.	Please select
0.02	5e-1	32	Zm.8622.1.A1_at	BM075445	CBL-interacting serine/threonine-protein kinase 15	-	9e-1	At5g04250	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.03	5e-1	32	Zm.5143.1.A1_at	AY107731.1	hypothetical protein LOC100276623	-	1e-1	At1g74730	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	32	Zm.13862.1.S1_at	AY270040.1	Na+/H+ antiporter NHX5	-	4e-9	At5g55470	ATNHX3	C.G.	S.X.	Please select
0.03	2e+0	30	Zm.8912.1.S1_at	BG837264	transmembrane protein 50A	-	7e-3	At1g36980	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-1	34	Arabidopsis thaliana	At5g66800	836813	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	3e-2	38	Glycine max	HgAffx.22886.1.S1_at	BG310664	-	-	3e+0	At1g78410	VQ motif-containing protein	C.G.	S.X.	Please select
0.15	2e-25	113	Hordeum vulgare	Contig11633_at	Contig11633	-	-	6e-1	At3g53650	histone H2B, putative	C.G.	S.X.	Please select
0.16	8e-34	143	Oryza sativa	Os07g0264800	AK066403.1	-	GCN5-related N-acetyltransferase domain containingprotein	2e+0	At3g13950	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	3e-2	38	Populus trichocarpa	PtpAffx.204868.1.S1_at	pmrna9623	hypothetical protein	-	1e+0	At5g45910	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	3e-1	34	Triticum aestivum	TaAffx.31773.1.S1_at	CA607934	-	-	4e-2	At5g23760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.06	1e+0	30	Vitis vinifera	1619991_at	CF373415	-	-	3e+0	At4g24231	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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