Gene omics information

Query gene ID	ZmAffx.1037.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	ZmAffx.1037.1.A1_at	AI881746	-	-	8e-1	At1g46768	RAP2.1 (related to AP2 1)	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.1055.1.S1_at	AI881878	hypothetical protein LOC100279811	-	5e-2	At4g01940	NFU1	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1056.1.A1_at	AI881906	-	-	3e+0	At1g31370	-	S.X.	H.G.	Please select
0.50	65.7	Zm.9319.1.A1_at	CF627080	hypothetical protein LOC100216855	-	2e+0	At5g10000	ATFD4 (ferredoxin 4)	S.X.	H.G.	Please select
0.44	55.7	Zm.8565.1.S1_at	CO528893	hypothetical protein LOC100279882	-	8e-7	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	S.X.	H.G.	Please select
0.20	14.2	Zm.15903.1.S1_at	L77912.1	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.8	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	2e-123	440	ZmAffx.1037.1.S1_at	AI881746	hypothetical protein LOC100273161	-	8e-1	At1g46768	RAP2.1 (related to AP2 1)	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.9941.1.A1_at	CB350589	bHLH transcription factor	-	2e-1	At4g09750	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.01	2e-2	38	Zm.1883.1.A1_at	AY107696.1	-	-	5e-25	At2g14170	ALDH6B2	C.G.	S.X.	Please select
0.12	9e-2	36	ZmAffx.1177.1.S1_at	AW927462	-	-	7e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	9e-2	36	Zm.7143.1.S1_at	AF061107.1	myc transcription factor7	-	1e+0	At5g46760	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.6715.2.A1_at	BM337592	RING finger and CHY zinc finger domain-containing protein 1	-	3e-10	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.6676.1.S1_at	AW927976	nuclear transcription factor Y subunit C-2	-	2e-3	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.6150.1.A1_at	CF635417	nucleic acid binding protein	-	2e-1	At1g49600	ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.497.1.A1_at	AF236372.1	stomatin-like protein	-	2e-1	At5g54100	band 7 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-1	34	Arabidopsis thaliana	At1g46768	841117	RAP2.1 (related to AP2 1)	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	7e-2	38	Glycine max	PsAffx.C635000001_at	PsAffx.C635000001	-	-	3e+0	At2g32890	RALFL17 (RALF-LIKE 17)	C.G.	S.X.	Please select
0.05	2e-2	38	Hordeum vulgare	Contig2193_s_at	Contig2193	-	-	8e-4	At2g35640	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.14	9e-36	151	Oryza sativa	Os05g0207700	AK102665.1	-	Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1)	3e-19	At3g58690	protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	Ptp.5317.1.S1_s_at	BU832693	hypothetical protein	-	2e-15	At5g47390	myb family transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e-3	42	Triticum aestivum	TaAffx.107671.1.S1_at	CA696856	-	-	2e-1	At2g22470	AGP2 (ARABINOGALACTAN PROTEIN 2)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1614256_at	CB002433	hypothetical protein LOC100253803	-	2e-1	At4g18620	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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