Gene omics information

Query gene ID	ZmAffx.1036.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	ZmAffx.1036.1.A1_at	AI881726	-	-	1e-1	At2g43795	unknown protein	S.X.	H.G.	Please select
0.77	92.1	Zm.2146.1.A1_at	AW287813	-	-	5e+0	At5g35475	-	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.104.1.A1_at	AI665536	hypothetical protein LOC100273079	-	8e-1	At2g34980	SETH1	S.X.	H.G.	Please select
0.55	71.6	Zm.12405.1.A1_at	BM381554	alpha/beta hydrolase fold	-	2e+0	At1g64340	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.2463.2.S1_at	AW191411	hypothetical protein LOC100193981	-	3e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
51.9	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
46.4	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	3e-145	511	ZmAffx.1036.1.S1_at	AI881726	-	-	1e-1	At2g43795	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	32	Zm.12631.1.S1_at	BU080452	-	-	2e+0	At3g16040	-	C.G.	S.X.	Please select
0.04	3e+0	30	ZmAffx.170.1.S1_at	AI668224	-	-	8e-1	At1g13245	RTFL17 (ROTUNDIFOLIA LIKE 17)	C.G.	S.X.	Please select
0.04	3e+0	30	ZmAffx.170.1.A1_at	AI668224	violaxanthin de-epoxidase	-	8e-1	At1g13245	RTFL17 (ROTUNDIFOLIA LIKE 17)	C.G.	S.X.	Please select
0.03	3e+0	30	Zm.6809.2.A1_a_at	AW308676	hypothetical protein LOC100273388	-	5e+0	At1g62220	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	30	Zm.18039.1.A1_at	CK985952	hypothetical protein LOC100191748	-	1e+0	At5g28060	40S ribosomal protein S24 (RPS24B)	C.G.	S.X.	Please select
0.04	3e+0	30	Zm.17322.1.A1_at	CK370219	-	-	3e-84	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.03	1e+1	28	Zm.7954.1.A1_at	BM080605	-	-	4e+0	At2g37240	-	C.G.	S.X.	Please select
0.02	1e+1	28	Zm.8050.1.A1_at	CF244335	ABC transporter C05D10.3 in chromosome III	-	2e-19	At1g17840	WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-1	36	Arabidopsis thaliana	At2g43795	818983	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	32	Glycine max	HgAffx.13452.1.S1_at	CB374530	-	-	9e-1	At1g29070	ribosomal protein L34 family protein	C.G.	S.X.	Please select
0.04	9e-1	32	Hordeum vulgare	Contig19080_at	Contig19080	-	-	4e-1	At1g75270	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	C.G.	S.X.	Please select
0.06	9e-1	34	Oryza sativa	Os07g0206400	BI804080	-	13 kDa prolamin precursor	6e+0	At5g57370	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-1	36	Populus trichocarpa	PtpAffx.138733.1.S1_at	DN495047	-	-	4e-3	Atmg01360	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e+0	30	Triticum aestivum	TaAffx.119331.1.A1_at	BJ276731	-	-	3e+0	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select
0.05	9e-3	38	Vitis vinifera	1621851_at	BQ800610	-	-	1e+0	At5g63370	protein kinase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage