Gene omics information

Query gene ID	ZmAffx.1019.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1019.1.S1_at	AI881532	-	-	3e+0	At2g29070	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.6944.4.A1_a_at	AW498023	actin-1	-	4e-31	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select
0.67	85.8	Zm.17637.1.S1_at	CK368490	-	-	5e+0	At2g22450	riboflavin biosynthesis protein, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.14270.1.A1_a_at	AY105925.1	hypothetical protein LOC100216603	-	2e+0	At3g56510	TBP-binding protein, putative	S.X.	H.G.	Please select
0.57	75.1	Zm.14014.1.A1_at	CF050089	NADH-ubiquinone oxidoreductase 23 kDa subunit	-	2e-62	At1g79010	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.597.1.A1_at	AI715025	-	-	8e-1	At1g43260	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.1	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.1019.1.A1_at	AI881532	-	-	3e+0	At2g29070	ubiquitin fusion degradation UFD1 family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.16806.1.S1_at	CF602420	-	-	1e+0	At1g36100	myosin heavy chain-related	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.304.1.A1_at	AI670437	-	-	1e-2	At3g48890	ATMP2	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.304.1.S1_at	AI670437	-	-	1e-2	At3g48890	ATMP2	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9639.1.A1_at	BM334436	-	-	1e+0	At3g53580	diaminopimelate epimerase family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5761.1.A1_at	AI649473	-	-	7e-22	At5g28850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4446.1.S1_at	AW520005	hypothetical protein LOC100279946	-	1e-7	At4g14340	CKI1 (CASEIN KINASE I)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4283.1.A1_a_at	CF048229	hypothetical protein LOC100193869 /// hypothetical protein LOC100279728	-	3e-22	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4283.1.A1_x_at	CF048229	hypothetical protein LOC100279728	-	3e-22	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At2g29070	817455	ubiquitin fusion degradation UFD1 family protein	F:unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;OFMP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e+0	32	Glycine max	PsAffx.psZO011iE08r_at	PsAffx.psZO011iE08r	-	-	1e+0	At5g28610	-	C.G.	S.X.	Please select
0.06	2e+0	32	Hordeum vulgare	Contig3373_s_at	Contig3373	-	-	5e-5	At2g18700	ATTPS11	C.G.	S.X.	Please select
0.20	7e-9	61	Oryza sativa	Os01g0602300	NM_192647.1	-	-	4e-4	At1g68020	ATTPS6	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.218596.1.S1_at	pmrna34264	hypothetical protein	-	9e-1	At2g45400	BEN1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	Ta.7537.2.S1_a_at	CA648066	-	-	1e+0	At5g22390	unknown protein	C.G.	S.X.	Please select
0.05	9e-1	32	Vitis vinifera	1618726_at	CB973545	hypothetical protein LOC100265140	-	2e-27	At1g06410	ATTPS7	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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