CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.1016.1.A1_at

Gene name Hypothetical protein LOC100194117

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.6 ZmAffx.1016.1.A1_at AI881482 Hypothetical protein LOC100194117 - 1e-2 At4g19985 GCN5-related N-acetyltransferase (GNAT) family protein S.X. H.G.
0.65 82.1 Zm.17179.1.A1_at CK368850 - - 9e-14 At1g27740 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.65 82.1 Zm.5729.1.A1_at AI637125 peptidoglycan binding domain containing protein - 3e-23 At4g13670 PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5) S.X. H.G.
0.64 81.7 Zm.4553.1.S1_at BE238641 - - 4e-1 At4g28860 ckl4 (Casein Kinase I-like 4) S.X. H.G.
0.62 79.8 Zm.10449.1.S1_at BQ528465 hypothetical protein LOC100274604 - 5e-4 At4g17670 senescence-associated protein-related S.X. H.G.
0.62 79.8 Zm.13679.1.A1_at AW424469 chemocyanin - 9e-5 At1g72230 plastocyanin-like domain-containing protein S.X. H.G.
0.61 79.5 Zm.6532.4.S1_a_at BM380149 dehydrin 13 - 9e-2 At1g20440 COR47 (COLD-REGULATED 47) S.X. H.G.
0.60 77.8 Zm.791.1.S1_s_at AY111675.1 hypothetical protein LOC100280140 - 3e+0 At4g16720 60S ribosomal protein L15 (RPL15A) S.X. H.G.
0.60 77.8 Zm.15421.1.S1_at AY107122.1 - - 1e+0 At3g42050 vacuolar ATP synthase subunit H family protein S.X. H.G.
0.59 76.1 Zm.12678.2.S1_at CN844593 - - 8e-11 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.2 99.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.8 99.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0 99.5 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0 99.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0 99.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6 99.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1 99.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0 99.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5 97.1 GSM320458 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 807 ZmAffx.1016.1.S1_at AI881482 hypothetical protein LOC100194117 - 1e-2 At4g19985 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.02 3e-1 34 ZmAffx.7.1.S1_at AY683004.1 monosaccharide transport protein 1 - 4e-9 At1g50310 STP9 (SUGAR TRANSPORTER 9) C.G. S.X.
0.03 3e-1 34 Zm.2444.1.S1_at AY105077.1 hypothetical protein LOC100192083 - 1e-19 At4g20150 unknown protein C.G. S.X.
0.02 3e-1 34 Zm.14.1.S1_at BI430690 nucleic acid binding protein1 - 1e-8 At5g50250 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative C.G. S.X.
0.03 3e-1 34 Zm.12164.1.A1_at CO521714 hypothetical protein LOC100193480 - 1e-1 At5g60490 FLA12 C.G. S.X.
0.02 1e+0 32 Zm.490.1.S1_a_at AF216853.1 coatomer protein2 - 9e-25 At2g34840 coatomer protein epsilon subunit family protein / COPE family protein C.G. S.X.
0.02 1e+0 32 Zm.3756.1.A1_at BE025409 - - 8e-3 At2g24520 AHA5 (Arabidopsis H(+)-ATPase 5) C.G. S.X.
0.02 1e+0 32 Zm.3756.1.S1_at AY110095.1 - - 1e-1 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.02 1e+0 32 Zm.3752.1.S1_at BM336170 pyridoxal kinase - 2e-14 At5g37850 SOS4 (SALT OVERLY SENSITIVE 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-2 40 Arabidopsis thaliana At4g19985 827743 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:N-terminal protein myristoylation, metabolic process;C:unknown;BPOA - - - C.G. S.X.
0.05 4e+0 32 Glycine max PsAffx.psZG008xI07f_at PsAffx.psZG008xI07f - - 6e-1 At5g25940 early nodulin-related C.G. S.X.
0.21 6e-31 133 Hordeum vulgare Contig8611_at Contig8611 - - 1e-21 At4g39280 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative C.G. S.X.
0.11 2e-18 93 Oryza sativa Os10g0400800 CB625883 - Phenylalanyl-tRNA synthetase alpha chain (EC6.1.1.20) (Phenylalanine--tRNA ligase alpha chain)(PheRS) (CML33) 4e-1 At4g39280 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative C.G. S.X.
0.05 4e+0 32 Populus trichocarpa PtpAffx.220916.1.S1_s_at pmrna37399 hypothetical protein /// hypothetical protein /// cc-nbs-lrr resistance protein /// cc-nbs resistance protein /// cc-nbs-lrr resistance protein /// cc-nbs resistance protein /// cc-nbs resistance protein /// cc-nbs resistance protein /// cc-nbs resistance protein /// nbs-lrr resistance protein /// cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein - 4e-1 At5g25170 unknown protein C.G. S.X.
0.19 7e-32 137 Triticum aestivum Ta.1529.1.S1_at CK153906 - - 5e-21 At4g39280 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative C.G. S.X.
0.07 9e-1 32 Vitis vinifera 1617653_at CA818371 hypothetical protein LOC100260671 - 5e-2 At4g39280 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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