Gene omics information

Query gene ID	Zm.9975.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.9975.1.A1_at	BM074697	-	-	7e-6	At5g64200	ATSC35	S.X.	H.G.	Please select
0.67	85.8	Zm.17192.1.A1_at	BM339467	-	-	5e+0	At2g22520	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.1482.2.A1_at	CO531725	hypothetical protein LOC100279242	-	7e+0	At5g17280	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.6454.1.A1_at	AY106137.1	PP1/PP2A phosphatases pleiotropic regulator PRL1	-	9e-29	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.18946.1.A1_at	BM338625	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.38	44.2	Zm.13763.1.A1_at	CF624710	hypothetical protein LOC100279845	-	2e-4	At4g38690	1-phosphatidylinositol phosphodiesterase-related	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.0	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.1	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.4	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-28	125	Zm.6480.2.S1_at	AI065715	-	-	1e-11	At5g64200	ATSC35	C.G.	S.X.	Please select
0.10	2e-28	125	Zm.6480.2.S1_a_at	AI065715	hypothetical protein LOC100272627	-	1e-11	At5g64200	ATSC35	C.G.	S.X.	Please select
0.07	8e-19	93	Zm.6480.1.S1_s_at	AW231306	hypothetical protein LOC100272627	-	1e-11	At5g64200	ATSC35	C.G.	S.X.	Please select
0.07	8e-19	93	Zm.6480.1.S1_at	AW231306	hypothetical protein LOC100272627	-	1e-11	At5g64200	ATSC35	C.G.	S.X.	Please select
0.04	4e-2	38	Zm.6432.1.A1_a_at	BQ538326	hypothetical protein LOC100191156	-	7e-10	At5g64200	ATSC35	C.G.	S.X.	Please select
0.04	4e-2	38	Zm.6432.1.A1_at	BQ538326	hypothetical protein LOC100191156	-	7e-10	At5g64200	ATSC35	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.13243.1.S1_at	AY059646.1	alternative oxidase AOX1 precursor	-	3e-6	At3g22370	AOX1A (ALTERNATIVE OXIDASE 1A)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.790.2.A1_at	CK348114	hypothetical protein LOC100274922	-	2e+0	At1g07900	LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select
0.03	7e-1	34	Zm.6339.1.A1_at	AI691450	-	-	3e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-6	52	Arabidopsis thaliana	At5g64200	836541	ATSC35	encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	HgAffx.18148.1.S1_at	CB238546	-	-	2e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.07	6e-17	87	Hordeum vulgare	Contig4776_s_at	Contig4776	-	-	2e-13	At5g64200	ATSC35	C.G.	S.X.	Please select
0.05	5e-2	40	Oryza sativa	Os03g0388000	AK062658.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	1e-1	At3g02065	DEAD/DEAH box helicase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-8	59	Populus trichocarpa	Ptp.1271.3.S1_a_at	CK113299	hypothetical protein	-	6e-33	At5g64200	ATSC35	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	5e-19	95	Triticum aestivum	Ta.8927.3.S1_x_at	CA726728	-	-	2e-11	At5g64200	ATSC35	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1620105_at	CB007928	-	-	2e-6	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage