Gene omics information

Query gene ID	Zm.9960.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	58.4	Zm.9960.1.A1_at	BM331809	-	-	1e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.61	79.5	Zm.2840.1.A1_at	BM080758	hypothetical protein LOC100275818	-	6e-1	At5g50790	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.7128.2.A1_at	CO526884	hypothetical protein LOC100276381	-	5e+0	At5g44100	ckl7 (Casein Kinase I-like 7)	S.X.	H.G.	Please select
0.55	71.6	Zm.17273.1.S1_at	CF638111	hypothetical protein LOC100273148	-	8e-4	At5g53140	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.4787.1.A1_at	AY106491.1	ribosomal protein S11 containing protein	-	9e-3	At3g23610	dual specificity protein phosphatase (DsPTP1)	S.X.	H.G.	Please select
0.31	31.6	Zm.4466.1.S1_at	AF461815.1	single myb histone4	-	1e-5	At1g17520	DNA-binding protein, putative	S.X.	H.G.	Please select
0.08	3.4	Zm.8032.1.A1_at	AI737866	acyl-CoA synthetase long-chain family member 3	-	2e-14	At2g04350	long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.1	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.3	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.0	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.8	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.7	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	32	Zm.6653.1.S1_at	CA404358	hypothetical protein LOC100274393	-	6e-4	At5g54680	ILR3 (iaa-leucine resistant3)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3796.1.A1_at	BG836961	Hypothetical protein LOC100192039	-	8e-1	At2g32765	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.12749.1.S1_at	CF648846	-	-	2e-1	At1g58150	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.1176.1.A1_at	AW927389	-	-	8e-1	At3g18250	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.1176.1.S1_at	AW927389	-	-	8e-1	At3g18250	unknown protein	C.G.	S.X.	Please select
0.01	7e+0	30	ZmAffx.12.1.S1_at	AY562491.1	kaurene synthase2	-	1e-7	At4g02780	GA1 (GA REQUIRING 1)	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.9559.1.S1_at	AY461584.1	inward rectifying shaker K+ channel	-	6e-21	At5g46240	KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.9559.1.S1_s_at	AY461584.1	inward rectifying shaker K+ channel	-	6e-21	At5g46240	KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.7489.1.A1_at	BM078668	hypothetical protein LOC100193199	-	4e-1	At3g28980	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g54490	835537	PBP1 (PINOID-BINDING PROTEIN 1)	Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	GmaAffx.43781.1.A1_at	AW350514	-	-	1e-11	At5g01710	-	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	HVSMEi0011C12r2_x_at	HVSMEi0011C12r2	-	-	3e+0	At5g11425	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	36	Oryza sativa	Os01g0667900	AK105335.1	-	Glutaredoxin domain containing protein	2e+0	At4g38140	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.218912.1.S1_at	pmrna34668	hypothetical protein	-	5e-3	At1g29730	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.8337.1.S1_at	CA627003	-	-	6e-1	At3g03500	tatD-related deoxyribonuclease family protein	C.G.	S.X.	Please select
0.03	8e-2	36	Vitis vinifera	1609188_at	CD715995	hypothetical protein LOC100267424	-	2e-11	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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