Gene omics information

Query gene ID	Zm.9952.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.9952.1.A1_at	BM349898	-	-	6e+0	At5g46115	unknown protein	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.908.1.S1_at	AI770943	hypothetical protein LOC100279225	-	8e-1	At5g41720	-	S.X.	H.G.	Please select
0.44	55.7	Zm.10674.1.A1_at	BM380580	hypothetical protein LOC100194243	-	1e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	S.X.	H.G.	Please select
0.44	55.7	Zm.17712.1.S1_at	CK370052	hypothetical protein LOC100275406	-	8e-20	At5g19855	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.1690.1.A1_at	CK347441	density-regulated protein	-	4e-17	At5g11900	eukaryotic translation initiation factor SUI1 family protein	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.848.1.A1_at	AI770631	-	-	8e-1	At1g22720	wall-associated kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.1	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-1	34	Zm.7331.1.S1_at	CA831696	kinesin heavy chain	-	5e-13	At2g36200	kinesin motor protein-related	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.5579.1.A1_at	CF630296	fumarylacetoacetate hydrolase domain-containing protein 1	-	1e-1	At3g16700	fumarylacetoacetate hydrolase family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.3858.1.A1_at	AW065813	-	-	6e-7	At3g56210	binding	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.3900.1.S1_at	BM073698	-	-	9e-56	At2g07690	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.573.1.A1_at	AF131201.1	plasma membrane MIP protein	-	3e-37	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3169.3.S1_x_at	CF628824	60S ribosomal protein L33-B	-	2e-9	At1g74270	60S ribosomal protein L35a (RPL35aC)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3169.1.S1_at	AY104405.1	60S ribosomal protein L33-B	-	3e-6	At1g74270	60S ribosomal protein L35a (RPL35aC)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3169.3.S1_at	CF628824	60S ribosomal protein L33-B	-	2e-9	At1g74270	60S ribosomal protein L35a (RPL35aC)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At5g46115	834653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	PsAffx.CL2336Contig1_at	PsAffx.CL2336Contig1	-	-	2e+1	At5g08320	unknown protein	C.G.	S.X.	Please select
0.25	2e-29	129	Hordeum vulgare	Contig17585_at	Contig17585	-	-	6e-1	At5g22960	serine carboxypeptidase S10 family protein	C.G.	S.X.	Please select
0.19	2e-38	161	Oryza sativa	Os08g0152900	AK065666.1	-	ARM repeat fold domain containing protein	2e-5	At4g38120	binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.225333.1.S1_at	pmrna44599	hypothetical protein	-	1e+0	At3g56790	RNA splicing factor-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	34	Triticum aestivum	TaAffx.37317.1.A1_at	BJ286168	-	-	7e+0	At2g04031	-	C.G.	S.X.	Please select
0.04	7e+0	30	Vitis vinifera	1615361_at	CA814618	-	-	4e-11	At2g47170	ARF1A1C	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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