Gene omics information

Query gene ID	Zm.9934.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.9934.1.A1_at	BM332751	-	-	2e+0	At5g59740	UDP-galactose/UDP-glucose transporter-related	S.X.	H.G.	Please select
0.59	76.1	Zm.1681.1.A1_at	CA403368	-	-	5e+0	At3g06070	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.18110.1.S1_s_at	AY620409.1	arginine/serine-rich splicing factor 2 variant 2 /// arginine/serine-rich splicing factor 2 variant 3	-	3e-8	At3g61860	RSP31	S.X.	H.G.	Please select
0.40	48.5	Zm.8901.1.A1_at	AY107832.1	hypothetical protein LOC100192580	-	9e-3	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	S.X.	H.G.	Please select
0.29	28.1	Zm.13813.1.S1_at	CF011226	hypothetical protein LOC100272771	-	7e-26	At3g61790	seven in absentia (SINA) family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.12269.1.A1_at	CF646230	hypothetical protein LOC100193070	-	7e+0	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	S.X.	H.G.	Please select
0.27	24.6	Zm.6045.4.S1_at	AY105966.1	hypothetical protein LOC100191419	-	5e-4	At1g51200	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
78.7	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
64.9	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
52.3	100.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
0.8	76.0	GSM206312	Upper pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
0.8	76.0	GSM206318	Lower pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
0.8	76.0	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
0.7	73.7	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	6e-17	87	Zm.223.1.A1_at	AB024292.1	histidine-containing phosphotransfer protein	-	2e+0	At4g32860	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.4267.1.A1_at	BG841239	hypothetical protein LOC100272643	-	2e-4	At2g38000	chaperone protein dnaJ-related	C.G.	S.X.	Please select
0.03	7e-1	34	ZmAffx.418.1.A1_at	AI676850	-	-	1e-2	Atmg00760	-	C.G.	S.X.	Please select
0.03	7e-1	34	ZmAffx.418.1.S1_at	AI676850	-	-	1e-2	Atmg00760	-	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.7154.1.A1_at	AY111597.1	-	-	4e-7	At3g61490	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.7089.1.A1_at	BM079067	hypothetical protein LOC100217060	-	1e-1	At1g15270	-	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.6026.1.S1_at	CA405322	hypothetical protein LOC100194158	-	7e-21	At3g07100	protein transport protein Sec24, putative	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.4883.1.A1_at	AY107709.1	Hypothetical protein LOC100216906	-	2e-5	At1g07530	SCL14 (SCARECROW-LIKE 14)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.4883.1.S1_at	AI782987	hypothetical protein LOC100216906	-	4e-3	At2g37650	scarecrow-like transcription factor 9 (SCL9)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g59740	836095	UDP-galactose/UDP-glucose transporter-related	F:galactose transmembrane transporter activity;P:unknown;C:unknown;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-1	36	Glycine max	HgAffx.8203.1.S1_at	CB380298	-	-	3e-1	At5g42980	ATTRX3 (THIOREDOXIN 3)	C.G.	S.X.	Please select
0.04	3e+0	32	Hordeum vulgare	rbags24p23_at	rbags24p23	-	-	3e-1	At1g77770	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.05	6e-8	59	Oryza sativa	Os09g0567400	AK072521.1	-	Histidine-containing phosphotransfer protein	3e-2	At3g47130	F-box family protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.225849.1.S1_x_at	pmrna45474	hypothetical protein	-	1e+1	At4g28840	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.47703.1.S1_at	BJ240803	-	-	2e+0	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1616529_at	BQ792243	hypothetical protein LOC100243494	-	6e-50	At4g04910	NSF (N-ethylmaleimide sensitive factor)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage