Gene omics information

Query gene ID	Zm.9900.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.9900.1.A1_at	BM351046	-	-	2e-2	At5g28610	-	S.X.	H.G.	Please select
0.61	79.5	Zm.8612.1.A1_at	BM074907	hypothetical protein LOC100278970	-	6e+0	At3g27380	SDH2-1	S.X.	H.G.	Please select
0.59	76.1	Zm.15669.1.S1_at	CA403955	plant-specific domain TIGR01570 family protein	-	1e-4	At3g25640	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.1134.1.A1_at	AY112160.1	hypothetical protein LOC100193278	-	3e+0	At2g26940	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.53	69.1	Zm.16316.1.A1_at	CF244157	ATP binding protein	-	2e-1	At5g19210	DEAD/DEAH box helicase, putative	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.525.1.A1_at	AI711680	-	-	8e-1	At5g23170	protein kinase family protein	S.X.	H.G.	Please select
0.43	52.8	Zm.5230.1.A1_at	CA404914	acyl-desaturase	-	2e-17	At2g43710	SSI2	S.X.	H.G.	Please select
0.40	48.5	Zm.8846.1.A1_at	BM337343	-	-	4e+0	At3g29250	copper ion binding / oxidoreductase	S.X.	H.G.	Please select
0.40	48.5	Zm.2012.1.S1_at	AW566063	-	-	8e+0	At5g23220	NIC3 (NICOTINAMIDASE 3)	S.X.	H.G.	Please select
0.40	48.5	Zm.18038.1.S1_at	CD219308	-	-	2e+1	At5g66700	HB53	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.5	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.9	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.0	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-3	40	Zm.14547.1.S1_at	BG840169	-	-	2e+0	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	C.G.	S.X.	Please select
0.04	9e-3	40	Zm.14547.1.S1_a_at	BG840169	-	-	2e+0	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	C.G.	S.X.	Please select
0.04	1e-1	36	Zm.2318.1.A1_at	BM074442	-	-	9e-1	At1g23710	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	ZmAffx.1462.1.S1_at	11990232-29	-	-	0	Atcg00480	-	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.5926.1.S1_at	AY104624.1	-	-	1e-8	At4g16070	lipase class 3 family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.19053.1.S1_at	CO523639	hypothetical protein LOC100193386	-	2e+0	Atmg01020	-	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.13267.1.A1_at	CA828273	hypothetical protein LOC100279960	-	1e-1	At4g35987	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.13267.1.S1_at	H89379	-	-	1e-1	At4g35987	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.73.1.A1_at	BM267895	alpha tubulin6	-	0	At5g19780	TUA5	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	40	Arabidopsis thaliana	At5g28610	832960	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	Gma.474.1.S1_at	CD415694	-	-	2e-40	At3g07760	-	C.G.	S.X.	Please select
0.03	1e-2	40	Hordeum vulgare	Contig7410_at	Contig7410	-	-	7e-3	At5g57040	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.4659.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.206475.1.S1_at	pmrna12840	hypothetical protein	-	1e-2	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.31591.1.S1_x_at	CA612304	-	-	1e+1	At5g49250	beta-galactosidase	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1613463_a_at	CD797977	similar to DnaJ-like protein	-	1e-10	At1g56300	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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