Gene omics information

Query gene ID	Zm.9891.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.9891.1.A1_at	BM350582	-	-	1e+0	At5g27290	unknown protein	S.X.	H.G.	Please select
0.91	99.0	ZmAffx.786.1.A1_at	AI759096	-	-	3e-3	At1g72450	JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	S.X.	H.G.	Please select
0.83	95.6	Zm.4625.1.A1_at	AI737394	-	-	8e-1	At1g78630	emb1473 (embryo defective 1473)	S.X.	H.G.	Please select
0.67	85.8	Zm.8375.1.A1_at	BM080176	-	-	2e-2	At5g25450	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.925.1.S1_at	AI795348	-	-	8e-1	At1g43171	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.9555.2.A1_at	CK347442	-	-	3e+0	At2g22241	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.0	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.8	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.7	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.1	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.3	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.9	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1255	Zm.9891.1.A1_x_at	BM350582	-	-	1e+0	At5g27290	unknown protein	C.G.	S.X.	Please select
0.44	4e-79	293	Zm.9837.1.A1_at	BM341641	-	-	9e-1	At1g71740	unknown protein	C.G.	S.X.	Please select
0.19	4e-42	171	Zm.9746.1.A1_at	BM337704	-	-	5e+0	At5g43850	ARD4	C.G.	S.X.	Please select
0.22	1e-38	159	ZmAffx.1187.1.S1_at	BE012211	-	-	3e+0	At4g29033	-	C.G.	S.X.	Please select
0.22	1e-38	159	ZmAffx.1187.1.A1_at	BE012211	-	-	3e+0	At4g29033	-	C.G.	S.X.	Please select
0.18	7e-16	83	Zm.10051.1.A1_at	BM378991	-	-	3e+0	At1g36622	unknown protein	C.G.	S.X.	Please select
0.11	2e-13	75	Zm.9596.1.A1_at	BM336182	-	-	4e-1	At5g44350	ethylene-responsive nuclear protein -related	C.G.	S.X.	Please select
0.15	7e-13	73	Zm.8665.1.A1_at	BM075117	-	-	1e+0	At2g05400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.06	3e-12	71	Zm.2934.1.S1_at	CF033378	-	-	2e+0	At4g24973	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g27290	832787	unknown protein	F:unknown;P:unknown;C:chloroplast;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.26333.1.S1_at	BE473856	-	-	4e+0	At4g29033	-	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	rbags16o16_s_at	rbags16o16	-	-	8e+0	At5g50270	F-box family protein	C.G.	S.X.	Please select
0.02	2e-1	38	Oryza sativa	Os04g0692600	AK105982.1	-	Conserved hypothetical protein	6e-1	At5g06300	carboxy-lyase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.207170.1.S1_at	pmrna14222	hypothetical protein	-	7e-1	At5g45760	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	2e-2	40	Triticum aestivum	Ta.17449.1.S1_at	CA620972	-	-	1e+1	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1620189_at	CF512495	hypothetical protein LOC100265424	-	6e-30	At3g08840	D-alanine--D-alanine ligase family	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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