CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.9879.2.S1_at

Gene name vignain

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.9879.2.S1_at CA404875 vignain - 5e-5 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) S.X. H.G.
0.80 94.0 Zm.16907.1.S1_at AI691771 - - 4e-50 At3g18000 XPL1 (XIPOTL 1) S.X. H.G.
0.55 71.6 Zm.2903.1.A1_at CF019919 hypothetical protein LOC100274564 - 9e-8 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) S.X. H.G.
0.50 65.7 Zm.18323.1.A1_a_at CO532638 hypothetical protein LOC100193167 - 5e-1 At4g27120 unknown protein S.X. H.G.
0.50 65.7 Zm.19155.2.A1_x_at CO526374 - - 7e-9 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) S.X. H.G.
0.43 52.8 Zm.4434.1.S1_at CA402082 - - 2e+0 At4g10925 F-box family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.0 99.7 GSM162264 Mutant 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
26.4 99.7 GSM162266 Wild type 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
20.4 99.3 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
18.9 99.2 GSM162265 Wild type 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
11.8 98.6 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
10.1 98.4 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
10.1 98.4 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
10.0 98.4 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
9.0 98.2 GSM205375 Mo17xB73 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.9 97.9 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 1e-16 87 Zm.14139.1.A1_at BG266248 xylem cysteine proteinase 2 - 8e-4 At1g20850 XCP2 (xylem cysteine peptidase 2) C.G. S.X.
0.10 2e-11 69 Zm.7736.1.S1_at AF019146.1 maize insect resistance2 - 4e-3 At2g34080 cysteine proteinase, putative C.G. S.X.
0.08 2e-11 69 Zm.5987.1.A2_at AF019147.1 cysteine protease component of protease-inhibitor complex - 7e-14 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.08 2e-11 69 Zm.5987.1.A2_a_at AF019147.1 cysteine protease 1 /// cysteine protease 1 /// cysteine proteinase Mir3 - 7e-14 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.08 2e-11 69 Zm.5987.1.A1_at BM075175 cysteine protease 1 - 7e-14 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.04 2e-8 59 Zm.14983.2.A1_at AY109416.1 - - 3e-5 At5g27150 NHX1 (NA+/H+ EXCHANGER) C.G. S.X.
0.01 2e-8 59 Zm.14983.2.S1_at CO524096 - - 5e-10 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) C.G. S.X.
0.07 9e-8 57 Zm.3701.1.S1_at CF636730 cysteine protease 1 - 1e-2 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.05 3e-7 56 Zm.2276.1.S1_at CO531514 thiol protease SEN102 - 3e+0 At1g61730 DNA-binding storekeeper protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-5 50 Arabidopsis thaliana At4g35350 829688 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) tracheary element vacuolar protein - - - C.G. S.X.
0.07 7e-5 50 Glycine max PsAffx.CL90Contig1_at PsAffx.CL90Contig1 - - 4e-3 At4g16190 cysteine proteinase, putative C.G. S.X.
0.50 8e-135 480 Hordeum vulgare Contig5626_s_at Contig5626 - - 2e+0 At5g50260 cysteine proteinase, putative C.G. S.X.
0.50 3e-88 327 Oryza sativa Os08g0556900 AK099308.1 - Cysteine proteinase (EC 3.4.22.-) 1e-2 At5g50260 cysteine proteinase, putative C.G. S.X.
0.05 7e-2 40 Populus trichocarpa PtpAffx.72551.1.S1_at CV231269 hypothetical protein - 1e-20 At5g50260 cysteine proteinase, putative C.G. S.X.
0.50 1e-159 563 Triticum aestivum Ta.10390.1.S1_at CK168322 - - 5e-5 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1608456_at CB971487 hypothetical protein LOC100250141 - 4e-14 At5g50260 cysteine proteinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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