Gene omics information

Query gene ID	Zm.9852.1.A1_at
Gene name	syntaxin 121
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.9852.1.A1_at	BM381073	syntaxin 121	-	5e-3	At5g63740	zinc finger protein-related	S.X.	H.G.	Please select
0.77	92.1	Zm.17816.2.A1_at	CK144883	-	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.12656.1.A1_at	CF010887	-	-	5e+0	At5g07020	proline-rich family protein	S.X.	H.G.	Please select
0.56	74.4	Zm.4775.1.A1_at	CK826898	-	-	1e-1	At2g36695	unknown protein	S.X.	H.G.	Please select
0.48	61.3	Zm.4540.1.S1_at	AY107181.1	hypothetical protein LOC100280182	-	8e-1	At1g11650	RNA-binding protein 45 (RBP45), putative	S.X.	H.G.	Please select
0.44	55.7	Zm.6423.2.A1_at	AI691968	hypothetical protein LOC100273356	-	1e+0	At3g23180	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.3	99.9	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
12.1	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e-12	71	Zm.4845.2.S1_at	AI833522	-	-	3e+0	At1g08560	SYP111 (SYNTAXIN OF PLANTS 111)	C.G.	S.X.	Please select
0.08	6e-10	63	Zm.4845.1.S1_at	CD442886	alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE	-	4e-5	At4g03330	SYP123 (SYNTAXIN OF PLANTS 123)	C.G.	S.X.	Please select
0.08	6e-10	63	Zm.4845.1.S1_x_at	CD442886	alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE	-	4e-5	At4g03330	SYP123 (SYNTAXIN OF PLANTS 123)	C.G.	S.X.	Please select
0.04	6e-4	44	Zm.2135.1.S1_at	CD436684	hypothetical protein LOC100217069	-	4e-26	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.03	9e-3	40	Zm.9942.1.A1_at	CK368883	hypothetical protein LOC100274544	-	8e-2	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.06	1e-1	36	Zm.6246.2.A1_at	AI677558	-	-	9e-7	At2g22080	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.1941.1.S1_at	AW519856	hypothetical protein LOC100278594	-	4e+0	At5g37200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.1726.1.S1_at	BF728502	-	-	6e-11	At1g79940	ATERDJ2A	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.16513.9.A1_a_at	CD444572	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-3	42	Arabidopsis thaliana	At5g63740	836494	zinc finger protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-2	40	Glycine max	HgAffx.3611.1.A1_at	CK349169	-	-	8e-4	At5g56950	NAP1	C.G.	S.X.	Please select
0.43	6e-103	373	Hordeum vulgare	Contig22370_at	Contig22370	-	-	5e-3	At1g29160	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.41	2e-90	333	Oryza sativa	Os03g0787000	AK065950.1	-	Syntaxin	1e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-3	44	Populus trichocarpa	Ptp.750.1.S1_s_at	BU808721	hypothetical protein	-	9e-2	At1g62333	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	8e-110	397	Triticum aestivum	Ta.13966.2.S1_s_at	CK198271	-	-	2e-1	At5g09750	HEC3 (HECATE 3)	C.G.	S.X.	Please select
0.07	4e-1	34	Vitis vinifera	1609773_at	CB978867	hypothetical protein LOC100261732	-	1e+0	At3g11600	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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