Gene omics information

Query gene ID	Zm.9792.1.A1_at
Gene name	pleckstrin homology domain-containing protein 1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.9792.1.A1_at	BM338998	pleckstrin homology domain-containing protein 1	-	7e-3	At5g05710	pleckstrin homology (PH) domain-containing protein	S.X.	H.G.	Please select
0.80	94.0	Zm.5567.1.A1_at	BE552517	Histone H2B.2	-	6e-1	At1g07000	ATEXO70B2 (exocyst subunit EXO70 family protein B2)	S.X.	H.G.	Please select
0.71	88.2	Zm.6846.1.A1_at	AI065459	-	-	5e-3	At2g32340	-	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.1002.1.S1_at	AI881341	hypothetical protein LOC100279402	-	2e-1	At1g04445	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.14272.2.A1_a_at	D10622.1	cystatin2 /// corn cystatin I	-	6e-7	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select
0.35	38.9	Zm.15852.2.S1_a_at	AY108720.1	-	-	1e-41	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	97.7	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.7	95.4	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	Zm.9651.1.A1_at	BM334647	-	-	4e+0	At3g03828	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.9840.1.A1_at	CK826945	-	-	1e-1	At1g08500	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.9739.1.A1_at	BU582289	hypothetical protein LOC100274104	-	8e-7	At3g01410	RNase H domain-containing protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.4828.1.A1_at	CA402577	-	-	1e-3	At1g55475	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.16475.1.S1_at	AF143681.1	cell cycle checkpoint protein MAD2 homolog	-	4e-5	At3g25980	mitotic spindle checkpoint protein, putative (MAD2)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.13609.1.S1_at	AY107570.1	-	-	2e+1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.1305.1.S1_at	AF034945.1	glycine-rich RNA binding protein	-	1e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.999.1.S1_at	AI881222	hypothetical protein LOC100279401	-	5e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.999.1.A1_at	AI881222	-	-	2e-4	At1g54215	proline-rich family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-3	42	Arabidopsis thaliana	At5g05710	830455	pleckstrin homology (PH) domain-containing protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	1e-42	174	Glycine max	Gma.10610.1.S1_at	AW349141	-	-	8e-49	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select
0.44	3e-130	464	Hordeum vulgare	Contig8077_at	Contig8077	-	-	7e-9	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select
0.40	5e-116	418	Oryza sativa	Os.12682.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-4	48	Populus trichocarpa	PtpAffx.44183.1.S1_at	CF228726	hypothetical protein	-	1e-19	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	3e-119	428	Triticum aestivum	TaAffx.113858.1.S1_x_at	BQ905249	-	-	7e-6	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select
0.25	3e-30	131	Vitis vinifera	1613668_at	CD799782	hypothetical protein LOC100263774	-	3e-23	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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