Gene omics information

Query gene ID	Zm.9760.1.A1_at
Gene name	hypothetical protein LOC100278683
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.0	Zm.9760.1.A1_at	BM335574	hypothetical protein LOC100278683	-	1e+0	At5g67060	HEC1 (HECATE 1)	S.X.	H.G.	Please select
0.57	75.1	Zm.16547.1.A1_at	CO520746	aldehyde dehydrogenase, dimeric NADP-preferring	-	6e+0	At3g10020	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.16536.1.A1_at	AY103592.1	spermidine synthase 1	-	1e-17	At1g23820	SPDS1 (spermidine synthase 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.17095.1.A1_at	BG840781	hypothetical protein LOC100191291	-	1e-13	At4g32830	AtAUR1 (ATAURORA1)	S.X.	H.G.	Please select
0.50	65.7	Zm.16536.1.A1_a_at	AY103592.1	hypothetical protein LOC100272866 /// spermidine synthase 1	-	1e-17	At1g23820	SPDS1 (spermidine synthase 1)	S.X.	H.G.	Please select
0.36	41.3	Zm.496.1.S1_at	AF236370.1	prohibitin3	-	7e-7	At5g40770	ATPHB3 (PROHIBITIN 3)	S.X.	H.G.	Please select
0.36	41.3	Zm.3130.1.A1_at	CF632753	hypothetical protein LOC100272828	-	8e-9	At1g23750	DNA-binding protein-related	S.X.	H.G.	Please select
0.27	24.6	Zm.17636.1.A1_at	CK368463	-	-	1e+0	At5g34882	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.6	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.3	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-2	38	Zm.11869.1.A1_at	CN844960	-	-	3e-1	At1g02710	glycine-rich protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.16334.1.A1_at	BM266447	protein transport protein SEC61 gamma subunit	-	3e-17	At5g50460	protein transport protein SEC61 gamma subunit, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.10491.1.S1_at	BM379045	-	-	2e+0	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2555.1.A1_at	CO528379	adaptor complexes medium subunit family protein	-	2e+0	At5g59860	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.16842.1.A1_at	CF602571	oxidoreductase	-	3e+0	At1g66230	MYB20 (myb domain protein 20)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.14407.2.S1_at	AW424519	hypothetical protein LOC100272648	-	3e-140	At1g56070	LOS1	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.9629.1.A1_at	BM334190	-	-	1e-3	At5g52330	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.7998.1.A1_at	AY106482.1	hypothetical protein LOC100273454	-	3e+0	At4g11680	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.6977.4.A1_at	AI714835	acetolactate synthase III	-	5e-4	At3g48560	CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g67060	836841	HEC1 (HECATE 1)	F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.75986.1.S1_at	AW755680	-	-	1e-2	At1g09870	histidine acid phosphatase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HK05D22r_x_at	HK05D22r	-	-	2e-1	At1g59835	unknown protein	C.G.	S.X.	Please select
0.10	5e-20	99	Oryza sativa	Os04g0394700	AK072978.1	-	Conserved hypothetical protein	3e-1	At4g36660	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.133714.1.A1_at	CV265741	hypothetical protein	-	8e-1	At4g03945	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	1e-16	87	Triticum aestivum	Ta.8402.2.A1_at	CA734668	-	-	3e+0	At5g12880	proline-rich family protein	C.G.	S.X.	Please select
0.04	6e+0	30	Vitis vinifera	1619045_at	CB341512	-	-	2e+0	At4g04900	RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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