Gene omics information

Query gene ID	Zm.9756.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.9756.1.A1_at	BM338065	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	S.X.	H.G.	Please select
0.57	75.1	Zm.10252.1.A1_at	AY108029.1	hypothetical protein LOC100279693	-	2e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.937.1.S1_at	AI820257	-	-	8e+0	At4g19620	unknown protein	S.X.	H.G.	Please select
0.48	61.3	Zm.5976.2.S1_x_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	S.X.	H.G.	Please select
0.46	58.4	Zm.12480.1.A1_at	AI901944	hypothetical protein LOC100194202	-	4e-1	At4g15393	CYP702A5	S.X.	H.G.	Please select
0.46	58.4	ZmAffx.144.1.S1_at	AI667795	-	-	8e-1	At3g57390	AGL18	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.138.1.S1_at	AI667759	-	-	3e+0	At1g66510	AAR2 protein family	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.172.1.A1_at	AI668238	-	-	3e+0	Atmg00240	-	S.X.	H.G.	Please select
0.32	33.4	ZmAffx.147.1.S1_at	AI667831	Hypothetical protein LOC100192026	-	3e+0	At2g20260	PSAE-2 (photosystem I subunit E-2)	S.X.	H.G.	Please select
0.32	33.4	Zm.10401.1.S1_at	CO524902	glyoxylate reductase	-	3e-12	At1g79870	oxidoreductase family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.0	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.4	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.7	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-15	81	Zm.9556.1.A1_at	BM382552	-	-	4e-1	At5g63480	unknown protein	C.G.	S.X.	Please select
0.08	4e-5	48	Zm.2807.1.A1_at	BM334793	zinc-finger protein 1	-	7e-1	At5g57345	unknown protein	C.G.	S.X.	Please select
0.04	9e-3	40	Zm.13777.1.A1_at	CK347797	-	-	8e-8	At1g27435	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.18437.1.A1_at	CO532358	hypothetical protein LOC100217102	-	3e-15	At3g03900	adenylylsulfate kinase, putative	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.18418.1.S1_at	CO533004	-	-	2e-7	At1g76670	transporter-related	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.161.1.S1_a_at	M77122.1	protein b-32	-	1e-1	At1g65270	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.161.3.S1_x_at	X70154.1	-	-	9e-1	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.161.2.S1_a_at	X70153.1	protein b-32	-	9e-2	At1g65270	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g38800	833871	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-1	36	Glycine max	Gma.4472.1.S1_at	BE658881	-	-	4e-2	At1g27730	STZ (salt tolerance zinc finger)	C.G.	S.X.	Please select
0.29	8e-28	123	Hordeum vulgare	Contig21793_at	Contig21793	-	-	1e-7	At5g43170	AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)	C.G.	S.X.	Please select
0.31	9e-31	135	Oryza sativa	Os03g0437200	AY295345.1	-	Zn-finger, C2H2 type domain containing protein	6e-4	At5g43170	AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.225657.1.S1_x_at	pmrna45156	hypothetical protein	-	9e+0	At4g26965	NADH:ubiquinone oxidoreductase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	6e-21	101	Triticum aestivum	TaAffx.26007.1.S1_at	CA693241	-	-	8e-1	At1g51823	unknown protein	C.G.	S.X.	Please select
0.07	2e-6	52	Vitis vinifera	1614289_at	CB001927	-	-	1e-3	At1g27730	STZ (salt tolerance zinc finger)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage