Gene omics information

Query gene ID	Zm.9745.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.9745.1.A1_at	BM341408	-	-	2e+1	At5g24570	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.652.1.S1_at	AY029559.1	methyl binding domain	-	2e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	S.X.	H.G.	Please select
0.67	85.8	Zm.1079.6.A1_at	CF634247	carbonic anhydrase	-	5e-1	At1g56550	UDP-xylosyltransferase	S.X.	H.G.	Please select
0.67	85.8	Zm.6364.1.S1_at	T20372	-	-	8e-1	At2g22060	-	S.X.	H.G.	Please select
0.47	59.9	Zm.15780.1.A1_at	CD484576	-	-	4e+0	At3g01472	CPuORF33 (Conserved peptide upstream open reading frame 33)	S.X.	H.G.	Please select
0.47	59.9	Zm.19028.1.S1_at	T18786	hypothetical protein LOC100192863	-	4e-2	At4g19270	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.4	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.1	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Zm.7460.1.A1_at	CA403853	Hypothetical protein LOC100193336	-	1e-4	At1g08780	AIP3 (ABI3-INTERACTING PROTEIN 3)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7081.2.S1_a_at	CF017560	hypothetical protein LOC100193634 /// 60S ribosomal protein L24 /// 60S ribosomal protein L24 /// ribosomal protein L32 homolog32	-	3e-45	At3g53020	STV1 (SHORT VALVE1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.7081.1.S1_x_at	BM078729	hypothetical protein LOC100193634 /// ribosomal protein L32 homolog32	-	7e-26	At2g36620	RPL24A (ribosomal protein L24)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.7081.1.S1_at	BM078729	Hypothetical protein LOC100193634	-	7e-26	At2g36620	RPL24A (ribosomal protein L24)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4805.1.A1_at	CD441355	heat shock protein 70 kDa	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17743.1.S1_at	CK370833	-	-	2e+1	At3g42180	catalytic/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.622.1.A1_at	AI715050	-	-	1e+1	At2g44370	DC1 domain-containing protein	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.622.1.S1_at	AI715050	-	-	1e+1	At2g44370	DC1 domain-containing protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.9206.1.A1_at	BM267319	hypothetical protein LOC100277714	-	5e+0	At4g29930	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e+1	30	Arabidopsis thaliana	At5g24570	832528	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	HgAffx.19936.1.S1_at	CA939244	-	-	1e-1	At2g33990	iqd9 (IQ-domain 9)	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig17181_at	Contig17181	-	-	6e-4	At5g39590	-	C.G.	S.X.	Please select
0.14	2e-31	137	Oryza sativa	Os02g0811200	9630.m05621	-	EGF-like calcium-binding domain containing protein	1e-3	At1g21250	WAK1 (CELL WALL-ASSOCIATED KINASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	Ptp.6203.1.S1_s_at	CK102327	hypothetical protein	-	4e+0	At2g20921	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-1	36	Triticum aestivum	TaAffx.59180.1.S1_at	CA606725	-	-	1e+0	At2g11520	CRCK3	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1612253_at	CB970527	hypothetical protein LOC100263987	-	4e+0	At3g61370	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage