Gene omics information

Query gene ID	Zm.9712.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.9712.1.A1_at	BM336467	-	-	9e-2	At5g25810	tny (TINY)	S.X.	H.G.	Please select
0.40	48.5	Zm.8293.1.S1_at	CF626174	harpin-induced protein	-	7e-1	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	S.X.	H.G.	Please select
0.32	33.4	Zm.8292.1.S1_at	AY106611.1	hypothetical protein LOC100275334	-	6e-15	At4g16450	unknown protein	S.X.	H.G.	Please select
0.16	9.4	Zm.1039.2.A1_at	CF384547	-	-	2e+0	At3g59270	syntaxin-related family protein	S.X.	H.G.	Please select
0.15	8.6	Zm.9804.1.A1_at	CD956095	-	-	4e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	S.X.	H.G.	Please select
0.15	8.6	Zm.9405.1.A1_at	BM336416	-	-	1e-1	At1g54970	ATPRP1 (PROLINE-RICH PROTEIN 1)	S.X.	H.G.	Please select
0.13	6.8	Zm.13559.2.A1_a_at	BM333883	-	-	5e+0	At4g23380	unknown protein	S.X.	H.G.	Please select
0.10	4.6	ZmAffx.1033.1.A1_at	AI881710	-	-	8e-1	At1g12064	unknown protein	S.X.	H.G.	Please select
0.05	1.9	Zm.8772.1.A1_at	CF018678	hypothetical protein LOC100192757	-	2e-38	At5g54080	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.0	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.6	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.2	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.9	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.5	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Zm.6882.2.A1_at	BG837779	hypothetical protein LOC100191938	-	4e-2	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.9472.1.A1_at	CF006768	hypothetical protein LOC100276276	-	6e-6	At5g23760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.18133.1.A1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.18133.1.S1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	C.G.	S.X.	Please select
0.01	2e+0	32	ZmAffx.12.1.S1_at	AY562491.1	kaurene synthase2	-	1e-7	At4g02780	GA1 (GA REQUIRING 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8909.1.A1_at	CF636488	hypothetical protein LOC100275937 /// hypothetical protein LOC100278999	-	1e-1	At5g36662	-	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4453.1.S1_at	AI714926	Hypothetical protein LOC100194310	-	6e-20	At2g01220	nucleotidyltransferase	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.16923.1.A1_at	AI374569	hypothetical protein LOC100193833	-	7e-36	At2g34430	LHB1B1	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.15995.1.A1_a_at	AI666121	peptidyl-prolyl cis-trans isomerase CYP19-4	-	1e-48	At2g29960	CYP5 (CYCLOPHILIN 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-2	38	Arabidopsis thaliana	At5g25810	832650	tny (TINY)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-2	40	Glycine max	GmaAffx.22372.1.S1_at	CD401350	-	-	2e-24	At3g56290	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig9996_at	Contig9996	-	-	1e+0	At3g18460	unknown protein	C.G.	S.X.	Please select
0.14	1e-17	91	Oryza sativa	Os04g0403400	AK120071.1	-	Conserved hypothetical protein	3e-5	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.216189.1.S1_s_at	pmrna30808	hypothetical protein	-	7e-4	At4g39700	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	9e-2	38	Triticum aestivum	TaAffx.50281.1.S1_at	CA743314	-	-	4e+0	At3g62840	-	C.G.	S.X.	Please select
0.05	2e-3	42	Vitis vinifera	1619140_at	CF606031	hypothetical protein LOC100246049	-	4e-4	At2g35270	DNA-binding protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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