Gene omics information

Query gene ID	Zm.9667.1.A1_at
Gene name	transcription factor MYB42
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.9667.1.A1_at	BM341541	transcription factor MYB42	-	1e+0	At3g48490	unknown protein	S.X.	H.G.	Please select
0.52	67.3	Zm.18082.1.S1_at	BQ486521	hypothetical protein LOC100277280	-	7e-1	At2g39440	-	S.X.	H.G.	Please select
0.40	48.5	Zm.15436.1.S1_at	CD437346	-	-	2e+0	At5g37750	heat shock protein binding / unfolded protein binding	S.X.	H.G.	Please select
0.38	44.2	Zm.9319.1.A1_at	CF627080	hypothetical protein LOC100216855	-	2e+0	At5g10000	ATFD4 (ferredoxin 4)	S.X.	H.G.	Please select
0.35	38.9	Zm.8565.1.S1_at	CO528893	hypothetical protein LOC100279882	-	8e-7	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	S.X.	H.G.	Please select
0.32	33.4	Zm.9405.1.A1_at	BM336416	-	-	1e-1	At1g54970	ATPRP1 (PROLINE-RICH PROTEIN 1)	S.X.	H.G.	Please select
0.32	33.4	Zm.15276.1.A1_at	BM379849	-	-	3e-3	At1g12665	-	S.X.	H.G.	Please select
0.29	28.1	Zm.15903.1.S1_at	L77912.1	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.29	28.1	Zm.12318.1.A1_at	AY111626.1	pre-mRNA processing factor	-	1e-3	At5g38600	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select
0.28	28.1	Zm.7151.1.A1_at	BM339369	-	-	3e-9	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.3	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-16	85	Zm.13542.1.S1_at	AY108280.1	Transcription factor MYB31	-	4e-24	At4g38620	MYB4	C.G.	S.X.	Please select
0.10	6e-16	83	Zm.15854.1.S1_at	CK370725	-	-	4e-39	At4g38620	MYB4	C.G.	S.X.	Please select
0.08	5e-7	54	Zm.13515.1.A1_at	BI674748	R2R3MYB-domain protein	-	8e-17	At4g38620	MYB4	C.G.	S.X.	Please select
0.03	5e-4	44	Zm.14320.1.S1_at	BQ619478	hypothetical protein LOC100277165	-	1e-1	At1g65484	unknown protein	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.17363.1.S1_at	CK370960	-	-	2e-2	At1g72080	unknown protein	C.G.	S.X.	Please select
0.03	8e-3	40	Zm.7963.1.A1_at	CK348034	cation transport protein chaC	-	1e-1	At1g72080	unknown protein	C.G.	S.X.	Please select
0.04	8e-3	40	Zm.11828.1.A1_at	BM381087	-	-	9e-1	At5g53680	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.616.1.S1_at	AF326504.1	tonoplast membrane integral protein ZmTIP3-1	-	2e+0	At1g72080	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.34.5.A1_at	AI734535	-	-	4e-2	At2g36950	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At3g48490	824008	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-3	42	Glycine max	GmaAffx.57637.1.S1_at	AI736711	-	-	4e+0	At5g25640	-	C.G.	S.X.	Please select
0.12	6e-13	73	Hordeum vulgare	HVSMEb0004M17r2_at	HVSMEb0004M17r2	-	-	1e+0	Atmg00450	-	C.G.	S.X.	Please select
0.08	4e-8	59	Oryza sativa	Os08g0549000	AK060276.1	-	Myb, DNA-binding domain containing protein	2e+0	At4g00200	DNA binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.153237.2.A1_at	CV257808	hypothetical protein	-	7e-2	At2g36145	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-5	48	Triticum aestivum	Ta.17077.1.S1_at	CA617367	-	-	3e+0	At1g65484	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1612884_at	CA810969	-	-	4e+0	At3g24513	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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