Gene omics information

Query gene ID	Zm.9636.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.9636.1.A1_at	BM349325	-	-	2e+1	At5g67510	60S ribosomal protein L26 (RPL26B)	S.X.	H.G.	Please select
0.67	85.8	Zm.8793.1.A1_at	CD436545	-	-	3e+0	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	S.X.	H.G.	Please select
0.60	77.8	Zm.11630.1.A1_at	BM379429	-	-	4e+0	At4g13570	HTA4	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.140.1.S1_at	AI667779	-	-	8e-1	At2g26170	CYP711A1	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.1427.1.S1_at	11990232-12	-	-	5e-170	Atcg00190	-	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.140.1.A1_at	AI667779	-	-	8e-1	At2g26170	CYP711A1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.2	99.9	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
14.1	98.8	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
13.9	98.8	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
8.6	98.1	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.1	98.0	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.0	98.0	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.8	97.9	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
6.7	97.6	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.6	97.6	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
6.1	97.4	GSM253271	ZM_4.5d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Zm.9537.1.A1_at	BM348544	hypothetical protein LOC100193444 /// IAA15 - auxin-responsive Aux/IAA family member	-	2e-4	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9615.1.A1_at	BM338182	hypothetical protein LOC100272870	-	5e-1	At3g49820	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9358.1.A1_at	BM348583	hypothetical protein LOC100191697	-	1e+0	At3g12190	-	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.18951.1.A1_at	CO533345	hypothetical protein LOC100272652	-	5e+0	At5g47080	CKB1	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17838.1.S1_at	CD999196	phytosulfokine precursor protein containing protein	-	6e-3	At2g22860	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.14028.3.A1_at	BG841009	hypothetical protein LOC100192735	-	8e-6	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.10280.1.S1_at	CO529528	hypothetical protein LOC100216803	-	5e-2	At4g13010	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please select
0.03	8e+0	30	ZmAffx.1487.1.S1_at	11990232-44	-	-	8e-13	Atcg00660	-	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.8902.1.A1_at	CD441345	glycosyltransferase-like	-	6e-11	At1g18690	transferase/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At5g67510	836887	60S ribosomal protein L26 (RPL26B)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit;MAOFPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.21537.1.S1_at	BE022336	-	-	5e-2	At4g18070	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	Contig19785_at	Contig19785	-	-	4e+0	At3g57900	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	OsAffx.5058.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.20198.1.S1_at	BU819620	-	-	3e+0	At1g79520	cation efflux family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	1e-170	599	Triticum aestivum	Ta.17380.1.S1_at	CA620321	-	-	1e+1	At5g67510	60S ribosomal protein L26 (RPL26B)	C.G.	S.X.	Please select
0.03	2e+1	28	Vitis vinifera	1617539_at	CA808976	-	-	6e-2	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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