Gene omics information

Query gene ID	Zm.9635.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.9635.1.A1_at	BM334297	-	-	2e+1	At5g55940	emb2731 (embryo defective 2731)	S.X.	H.G.	Please select
0.50	65.7	Zm.12546.2.A1_a_at	AI770557	ATP binding protein	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	S.X.	H.G.	Please select
0.43	52.8	Zm.19280.1.S1_at	CO524637	hypothetical protein LOC100276261	-	4e-6	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	S.X.	H.G.	Please select
0.36	41.3	Zm.9811.1.A1_at	BM351496	-	-	1e+0	At3g50250	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.17780.1.S1_at	CK370645	hypothetical protein LOC100276040	-	4e+0	At2g22460	unknown protein	S.X.	H.G.	Please select
0.22	16.9	Zm.599.1.S1_x_at	AY093416.1	chromomethylase	-	2e+0	At5g49330	AtMYB111 (myb domain protein 111)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.1	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.6	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.7	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1328	Zm.9635.1.A1_a_at	BM334297	-	-	2e+1	At5g55940	emb2731 (embryo defective 2731)	C.G.	S.X.	Please select
0.34	2e-72	272	Zm.9635.2.A1_x_at	CF623977	-	-	1e+1	At5g24570	unknown protein	C.G.	S.X.	Please select
0.20	3e-12	71	Zm.52.1.A1_at	AB021175.1	root cap protein 1	-	2e+0	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.11	7e-4	44	Zm.53.1.S1_at	AB021176.1	root cap periphery gene2	-	2e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.4494.1.A1_at	AI734444	hypothetical protein LOC100276592	-	3e+0	At2g47420	dimethyladenosine transferase, putative	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.17328.1.A1_at	CF629185	hypothetical protein LOC100192114	-	5e+0	Atcg00560	-	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.10344.1.S1_at	AY129953.1	nrt2.1 protein	-	2e-4	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	C.G.	S.X.	Please select
0.01	3e+0	32	ZmAffx.1436.1.S1_at	11990232-2	-	-	2e-29	Atcg00040	-	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.9903.1.A1_at	BM335103	hypothetical protein LOC100273348	-	3e+0	At1g63220	C2 domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+1	30	Arabidopsis thaliana	At5g55940	835692	emb2731 (embryo defective 2731)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endoplasmic reticulum;MOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-3	42	Glycine max	GmaAffx.4994.2.S1_at	AI965988	-	-	5e-2	At5g67450	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)	C.G.	S.X.	Please select
0.36	3e-28	125	Hordeum vulgare	EBro08_SQ007_P13_at	EBro08_SQ007_P13	-	-	4e+0	At2g22060	-	C.G.	S.X.	Please select
0.27	1e-58	228	Oryza sativa	Os01g0968400	BE039193	-	Root cap family protein	1e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e+0	32	Populus trichocarpa	PtpAffx.62380.1.S1_s_at	BP936324	hypothetical protein	-	1e+0	At1g48940	plastocyanin-like domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	2e-37	157	Triticum aestivum	Ta.26169.1.A1_at	CD452458	-	-	1e+0	At1g78170	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1621667_at	CF403162	-	-	4e+0	At5g27889	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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